View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21527_low_6 (Length: 488)
Name: NF21527_low_6
Description: NF21527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21527_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 446; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 1 - 481
Target Start/End: Original strand, 24907547 - 24908021
Alignment:
| Q |
1 |
ggctctttgaaacgtgttattgctgatcaatgtttttatggaatgtggaaccaataagcaataacagaagtaaatatatgaacatttatttaatgcagta |
100 |
Q |
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| T |
24907547 |
ggctctttgaaacgtgttattgctgatcaatgtttttatggaatgtggaaccaataagcaataacagaagtaaatatatgaacatttatttaatgcagta |
24907646 |
T |
|
| Q |
101 |
tccaacaacataagaaataagattcatcataatgaatttaacccatgattccctttggaaccacatgtatcctaacaactaaatgataaatacatcatat |
200 |
Q |
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| T |
24907647 |
tccaacaatataagaaataagattcatcataatgaat------catgattccctttggaaccacatgtatcctaataactaaacgataaatacatcatat |
24907740 |
T |
|
| Q |
201 |
accagaaacatggaaccaacatcatttgtaaatagtaaccatcatctaggaaacatctctgtcacaatatctgtaccgctaaattgcgtagaggtttgac |
300 |
Q |
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| T |
24907741 |
accagaaacatggaaccaacatcatttgtaaatagtaaccatcatctaggaaacatctctgtcacaatatctgtaccgctaaattgcgtagaggtttgac |
24907840 |
T |
|
| Q |
301 |
atcgattttcatattttttgtgcttgattacttgagatgacgatgaaatctcattcaaagaaccactcgtctttgcggaagcattccatctgtatattcc |
400 |
Q |
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| T |
24907841 |
atcgattttcatattttttgtgcttgattacttgagatgacgatgaaatctcattcaaagaaccactcgtctttgcggaagcattccatctgtatattcc |
24907940 |
T |
|
| Q |
401 |
aggctcagtcaatgccttctcattaagatgaacttgtctggaaagcatttgtagaacttgtttcatggttggtctgtgctg |
481 |
Q |
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| T |
24907941 |
aggctcagtcaatgccttctcattaagatgaacttgtctggaaagcatttgtagaacttgtttcatggttggtctgtgctg |
24908021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 24 - 466
Target Start/End: Original strand, 24889863 - 24890303
Alignment:
| Q |
24 |
tgatcaatgtttttatggaatgtggaaccaataagcaataacagaagtaaatatatgaacatttatttaatgcagtatccaacaacataagaaataagat |
123 |
Q |
| |
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|||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |||| || ||||||||||||||||||| |
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| T |
24889863 |
tgatcaatttttgtatggaaagtggaaccaataagcaataacagaagtaaatatatgaacatttattcaatgtagtaccccacaacataagaaataagat |
24889962 |
T |
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| Q |
124 |
tcatcataatgaatttaacccatgattccctttggaaccacatgtatcctaacaactaaat-gataaatacatcatataccagaaacatggaaccaacat |
222 |
Q |
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| T |
24889963 |
tcatcataatatattta-cccattattccctttggaaccacatgtatcctaacaacaaaaaagataaatacatcacataccaaaagtatgaacccaacat |
24890061 |
T |
|
| Q |
223 |
catttgtaaatagtaaccatcatctaggaaacatctctgtcacaatatctgtaccgctaaattgcgtagaggtttgacatcgattttcatattttttgtg |
322 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
24890062 |
catttgcaaatagtaaccatcatctaggaaacatctctgtcacaatatctgtaccgctaaattgcgtagaggtttgatgtcgattttcatattttttgtg |
24890161 |
T |
|
| Q |
323 |
cttgattacttgagatgacgatgaaatctcattcaaagaaccactcgtctttgcggaagcattccatctgtatattccaggctcagtcaatgccttctca |
422 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| || ||||||||||| ||||||||||||||||||| |
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| T |
24890162 |
cttgattacttgagatgacgatgacatctcattcaaagaaccactcgtctttgcggaggcattctatttgtatattccatgctcagtcaatgccttctcc |
24890261 |
T |
|
| Q |
423 |
ttaagatgaacttgtctggaaagcatttgtagaacttgtttcat |
466 |
Q |
| |
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|| |||||||||| ||||||||||||||||||| |||||||| |
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|
| T |
24890262 |
ata--atgaacttgtttggaaagcatttgtagaacatgtttcat |
24890303 |
T |
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