View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21527_low_9 (Length: 434)
Name: NF21527_low_9
Description: NF21527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21527_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 16 - 431
Target Start/End: Original strand, 18691471 - 18691900
Alignment:
| Q |
16 |
cattttcttgatctagtattctt--gtgttgtattatctctaatccttattataagaaaatctttgaagattattttggccctattcattagaaaatctc |
113 |
Q |
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| T |
18691471 |
cattttcttgatctagtattcttttgtgttgtattatctctaatccttattataagaaaatctttgaagattattttggccctattcattagaaaatctc |
18691570 |
T |
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| Q |
114 |
taatcacaatttttatggtctatttagttcttaatagacttttctactcctcatttattatgtcactccgtattttgttccaaagtcaattctatacaca |
213 |
Q |
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| T |
18691571 |
taatcacaatttttatggtctatttagttcttaatagacttttctactcctcatttattatgtcactccgtattttgttccaaagtcaattctatacaca |
18691670 |
T |
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| Q |
214 |
tcaattctaacccttataaaatggaaccaaacatataaaagcttgataatgatttagataatattaatggataggtggattatagattaaataaagaccg |
313 |
Q |
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| T |
18691671 |
tcaattctaacccttataaaatggaaccaaacatataaaagcttgataatgatttagataatattaatggataggtggattatagattaaataaagaccg |
18691770 |
T |
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| Q |
314 |
gccaaaattcacaactttaacaccttacaaggaaaccaaata------------ttaaattgcacaaccaatatttaacattactaccctattgtttgtc |
401 |
Q |
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| T |
18691771 |
gccaaaattcacaactttaacaccttacaaggaaaccaaatattgtagggctttttaaattgcacaaccaatatttaacattactaccctattgtttgtc |
18691870 |
T |
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| Q |
402 |
cattttctcttatatctattcatctctctc |
431 |
Q |
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| T |
18691871 |
cattttctcttatatccatccatctctctc |
18691900 |
T |
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