View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21528_high_4 (Length: 427)
Name: NF21528_high_4
Description: NF21528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21528_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 7 - 424
Target Start/End: Original strand, 26304780 - 26305193
Alignment:
| Q |
7 |
caatcaaatcaggcaactgtgtactaaattgagttgtctatagtttgtgtagtcacttcaattaatggtacaaattgcatcatccacattgtgcattgta |
106 |
Q |
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| T |
26304780 |
caatcaaatcaggcaactgtgtactaaattgagttgtctatagtttgtgtagtcacttcaattaatggtacaaattgcatcatccacattgtgtattgta |
26304879 |
T |
|
| Q |
107 |
gaaaacaacttatgtgggaatacacacacatgcataatggtatataagaaagcggcttcaacatatgataataacaaacaagtttcttctcttaaaattt |
206 |
Q |
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| T |
26304880 |
gaaaacaacttatgtgggaatacacacacatgcataatggtatataagaaagcagcttcaacatatgataataacaaacaagtttcttcccttaaaattt |
26304979 |
T |
|
| Q |
207 |
gttggaaatcattattacatatacacttggccacatgcannnnnnnnnnnnnnnngaaacaactatataaatttattgaaagcatacccaacacaagatg |
306 |
Q |
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| T |
26304980 |
gttggaaatcattattacatatacaattggccacatgcatttttgttttgtttttgaaactac----taaatttattgaaagcatacccaacacaagatg |
26305075 |
T |
|
| Q |
307 |
tgaataggcagcacaaagattacagtccttggtcacatgcatgtggaatgtatatatatagtttataaatttattgaagatctcaagtttgtgaggtaag |
406 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
26305076 |
tgaataggcagcacaaagattacagtccttggtcacatgcatgtggaatgtatatatatagtttataaatttattgagtatctcaagtttgtgaggtaag |
26305175 |
T |
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| Q |
407 |
gatattggatctatgcat |
424 |
Q |
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| T |
26305176 |
gatattggatctatgcat |
26305193 |
T |
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