View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21528_high_5 (Length: 366)
Name: NF21528_high_5
Description: NF21528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21528_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 349
Target Start/End: Original strand, 2551447 - 2551788
Alignment:
| Q |
1 |
caatgaataatgtatatcatgttacacatggaatttatttgcaaaaaacttgcatatgaagtaaccgtgtaaatgaaaataaaaatagattccttatttg |
100 |
Q |
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| T |
2551447 |
caatgaataatgtatatcatgttacacatggaatttatttgcaaaaaacttgcatatgaagtaaccgtgtaaatgaaaataaaaatagattccttatttg |
2551546 |
T |
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| Q |
101 |
ttaccttgcctttgcatttggaatacattgaaaaatattctannnnnnnnnnnnnnnnnntagaatatttttcaagagtataaagaaaagaaagacaaa- |
199 |
Q |
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| T |
2551547 |
ttaccttgcctttgcatttggaatacattgaaaaatattct----------tatatatattagaatatttttcaagagtataaagaaaagaaagacaaat |
2551636 |
T |
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| Q |
200 |
--aaatgcttgaattttgtgtttctctaaagaacaagcttcaatgcaaacccaacaaaaaacatgtttatgatccaaagacaattaagcaccaaaaaggt |
297 |
Q |
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| T |
2551637 |
taaaatgcttgaattttgtgtttctctaaagaacaagcttcaatgcaaacccaacaaaaaacatgtttatgatccaaagacaattaagcaccaaaaaggt |
2551736 |
T |
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| Q |
298 |
aagaataatcagagaacaaagtcgggtttactcgatcattcaaatatcatcc |
349 |
Q |
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| T |
2551737 |
aagaataatcagagaacaaagtcgggtttactcgatcattcaaatatcatcc |
2551788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 297
Target Start/End: Original strand, 2562572 - 2562663
Alignment:
| Q |
206 |
ttgaattttgtgtttctctaaagaacaagcttcaatgcaaacc-caacaaaaaacatgtttatgatccaaagacaattaagcaccaaaaaggt |
297 |
Q |
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| T |
2562572 |
ttgaaatttgtctttctttcaagaggaagcttcaatgcaaaccacaaccaaaa-caagttcatgatccaaagacatttaggcaccaaaaaggt |
2562663 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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