View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21528_high_6 (Length: 286)
Name: NF21528_high_6
Description: NF21528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21528_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 50916526 - 50916797
Alignment:
| Q |
1 |
tagattgtacaggtaagaattctttacaaactcaagtttatcaaacctcctctaggtttatacattaataatgactttattttaatgaatttacttgcta |
100 |
Q |
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| T |
50916526 |
tagattgtacaggtaagaattctttacaa-ctcaagtttatcaaacctcctctaggtttatacattaataatgactttattttaatgaatttacttgctg |
50916624 |
T |
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| Q |
101 |
gagtttaaagcgttctgctgttattagagcttcagatggtttccggcaaagagaccctgcatctcacacaattcacattgtgtcatttttaaataaatag |
200 |
Q |
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| T |
50916625 |
gagtttaaagcgttctgctgttattagagcttcagatggtttccggcaaagagaccctgcatctcacacaattcacattgtgtcatttttaaataaatag |
50916724 |
T |
|
| Q |
201 |
gagttatgtaattgtttgttgtcatgctgagttgtgaatgattgtggtgtaaaacaatttttcattgatattg |
273 |
Q |
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| T |
50916725 |
gagttatgtaattgtttgttgtcatgctgagttgtgaatgattgtggtgtaaaacaattttacattgatattg |
50916797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 37 - 180
Target Start/End: Original strand, 42350899 - 42351041
Alignment:
| Q |
37 |
tttatcaaacctcctctaggtttatacattaataatgactttattttaatgaatttacttgctagagtttaaagcgttctgctgttattagagcttcaga |
136 |
Q |
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||||| |||||| |||||| ||||| || |||||| |||||||||||||||| |||||||| | |||| ||||||||| |||||||||||||| ||||| |
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| T |
42350899 |
tttatgaaacctactctagatttattcaataataaggactttattttaatga-tttacttgatgcagttcaaagcgttcggctgttattagagcatcaga |
42350997 |
T |
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| Q |
137 |
tggtttccggcaaagagaccctgcatctcacacaattcacattg |
180 |
Q |
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| T |
42350998 |
tgatttctggccaagagaccctgcatctcacacaattcacattg |
42351041 |
T |
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