View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21528_low_2 (Length: 481)
Name: NF21528_low_2
Description: NF21528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21528_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 21 - 468
Target Start/End: Complemental strand, 40052118 - 40051678
Alignment:
| Q |
21 |
aacttcctaaaactggaaaaagtaaataaagaaataaaatataggacttgttccttaagatagcagcaaatacttgattctttcacannnnnnnnnnnnn |
120 |
Q |
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| T |
40052118 |
aacttcctaaaactggaaaaagtaaataaagaaataaaatataggacttgttccttaagatagcagcaaatacttgattctttcac----tttttttttc |
40052023 |
T |
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| Q |
121 |
nnnnncagaacaatttcaacttataagtgaatgctaagcaatcatactcatccttttttggccacacaaccacttgagatttctctgtttttgctacctt |
220 |
Q |
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| T |
40052022 |
tctttcagaacaatttcaacttataagtgaatgctaagcaatcatactcatccttttttggccacacaaccacttgagatttctctgtttttgctacctt |
40051923 |
T |
|
| Q |
221 |
cctaagcaaaatccaagtggctactacagaaatgtctcatatctctcatttgacacaccacctttcaataatgtccaaccaaatatctataatactaata |
320 |
Q |
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| T |
40051922 |
cctaagcaaaatccaagtggctactacagaaatgtctcatatctctcatttgacacaccacctttcaataatgtccaaccaaatatctataatactaata |
40051823 |
T |
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| Q |
321 |
atatttcctccgtcccatnnnnnnntgtttgaa-nnnnnnnngtttccaattatacgaaaagttagtcatacattttaaaatgtgtttattgtttgttta |
419 |
Q |
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| T |
40051822 |
atatttcctccgtcccataaaaaaatgtttgaatttttttttgtttccaattaaacgaaaaattagtcatacattttaaaatgtgttta----ttgttta |
40051727 |
T |
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| Q |
420 |
ttttacttttatacatggtcaatataaatatatttatcccaaataagtg |
468 |
Q |
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| T |
40051726 |
ttttacttttatacatggtcaatataaatatatttatcccaaataagtg |
40051678 |
T |
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