View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21528_low_3 (Length: 443)
Name: NF21528_low_3
Description: NF21528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21528_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 127 - 425
Target Start/End: Original strand, 4097261 - 4097559
Alignment:
| Q |
127 |
ttgaagggaacttaattatatcactttgcaggaaaaatgcagaagccattaccagagttgttaaaggagtatgatctaccaataggaatctttcctcgtg |
226 |
Q |
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| T |
4097261 |
ttgaagggaacttaattatatcactttgcaggaaaaatgcagaagccattaccagagttgttaaaggagtatgatctaccaataggaatctttcctcgtg |
4097360 |
T |
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| Q |
227 |
atgcaacaaactacgaatttaacgaagagacggggaagcttcaagtcttcattcctcaggtctgcgaagtaggctataaggattcatccgtcttgcgttt |
326 |
Q |
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| T |
4097361 |
atgcaacaaactacgaatttaacgaagagacgggaaagcttgaagtcttcatccctcaggtctgcgaagtaggctataaggattcatccgtcttgcgttt |
4097460 |
T |
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| Q |
327 |
cttcaccaccgttactggttatctggagaaaggaaagctagcagacatcgagggaatgaagacaaaagtaattatctgggtaaaagtcacaaccatttt |
425 |
Q |
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| T |
4097461 |
cttcaccaccgttactggttatctggagaaaggaaagctagcagacatcgagggaatgaagacaaaagtaattatctgggtaaaagtgacaaccatttt |
4097559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 16 - 104
Target Start/End: Original strand, 4096095 - 4096183
Alignment:
| Q |
16 |
tattgaaggcggaaccaaatggttggtcaacaaagtaaaaggtttgtatttcctatttccatatgttgctcaaacatttatcttttcaa |
104 |
Q |
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| T |
4096095 |
tattgaaggcggaaccaaatggttggtcaacaaagtaaaaggtttctatttcctatttccatatgttgctcaaacatctatcttttcaa |
4096183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 89; Significance: 1e-42; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 151 - 395
Target Start/End: Complemental strand, 25796905 - 25796661
Alignment:
| Q |
151 |
tttgcaggaaaaatgcagaagccattaccagagttgttaaaggagtatgatctaccaataggaatctttcctcgtgatgcaacaaactacgaatttaacg |
250 |
Q |
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| T |
25796905 |
tttgcaggaaagatgcaaaaaccattaacagagttgctgaaggagtatgatctaccaataggaatctttccccgtgacgcaacaaactacgagttcaatg |
25796806 |
T |
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| Q |
251 |
aagagacggggaagcttcaagtcttcattcctcaggtctgcgaagtaggctataaggattcatccgtcttgcgtttcttcaccaccgttactggttatct |
350 |
Q |
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| T |
25796805 |
aagaaacaagaaagcttgttgtttacattcctcaagtgtgtgaagtaggctatagagattcatcagtcttgcgcttcacaaccactgtttctggttactt |
25796706 |
T |
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| Q |
351 |
ggagaaaggaaagctagcagacatcgagggaatgaagacaaaagt |
395 |
Q |
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| T |
25796705 |
ggagaaaggaaagctagctgatatagagggtatgaagaccaaagt |
25796661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 25797218 - 25797168
Alignment:
| Q |
17 |
attgaaggcggaaccaaatggttggtcaacaaagtaaaaggtttgtatttc |
67 |
Q |
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| T |
25797218 |
attgaaggaggaaccaaatggctcgtcaacaaattaaaaggtttgtatttc |
25797168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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