View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21529_high_1 (Length: 457)

Name: NF21529_high_1
Description: NF21529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21529_high_1
NF21529_high_1
[»] chr5 (18 HSPs)
chr5 (53-457)||(1600485-1600890)
chr5 (271-457)||(8535219-8535402)
chr5 (362-457)||(9074925-9075020)
chr5 (357-457)||(8636668-8636768)
chr5 (276-457)||(8548296-8548478)
chr5 (378-457)||(8677627-8677706)
chr5 (357-457)||(8644013-8644113)
chr5 (3-58)||(1600939-1600994)
chr5 (272-457)||(8528681-8528847)
chr5 (273-323)||(9075024-9075074)
chr5 (169-214)||(8548598-8548643)
chr5 (168-228)||(8535063-8535123)
chr5 (362-457)||(2905149-2905247)
chr5 (357-457)||(8641180-8641275)
chr5 (226-275)||(8548516-8548565)
chr5 (53-136)||(8528383-8528466)
chr5 (1-58)||(8534836-8534894)
chr5 (90-139)||(8534985-8535036)
[»] chr7 (3 HSPs)
chr7 (283-452)||(48362064-48362231)
chr7 (90-158)||(48362242-48362309)
chr7 (1-58)||(48362400-48362457)
[»] scaffold0627 (1 HSPs)
scaffold0627 (384-457)||(4488-4561)
[»] chr4 (3 HSPs)
chr4 (388-457)||(9442939-9443008)
chr4 (53-136)||(9442533-9442616)
chr4 (272-371)||(9442842-9442937)
[»] chr6 (1 HSPs)
chr6 (384-457)||(16716175-16716248)
[»] chr1 (2 HSPs)
chr1 (387-457)||(5130637-5130707)
chr1 (168-227)||(5130335-5130393)


Alignment Details
Target: chr5 (Bit Score: 334; Significance: 0; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 53 - 457
Target Start/End: Complemental strand, 1600890 - 1600485
Alignment:
Q  53 tagtaacaaaagattgcgtccacgtgannnnnnncctattaactatcagagccagatatgtaattaaaggtggtagatattagataaccaaaaaaactat 152  Q
    |||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1600890 tagtaacaaaagattgcgtccacgtgatttttttcctattaactatcagagccagatatgtaattaaaggtggtagatattagataaccaaaaaaactat 1600791  T
Q  153 aattatnnnnnnnnn-tataaacaacaccataaatatattagttgtaaaagcaattgattgaggaaagatcacaacttaacaacaagtcttcctttctcc 251  Q
    ||||||          ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||    
T  1600790 aattataaaaaaaaaatataaacaacaccataaatatattagttgtaaaagcaattgattgcggaaacatcacaacctaacaacaagtcttcctttctcc 1600691  T
Q  252 aaacagaatggcaaaataggaagtccctttgaaaacttgtcttatgattaaaattaattactatgacttgtatgggaacatcaaccatcaatcagattca 351  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  1600690 aaacagaatggcaaaataggaagtccctttgaaaacttgtcttatgattaaaattaattactatgacttgtatgggaacatcgaccatcaatcagattca 1600591  T
Q  352 aacgccaataaaaataaaatatttgaagctacattcttaccttgagtggatattcagcacctcaatattgtcccctttcaagacatccttcaatgaaatt 451  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1600590 aacgccaataaaaataaaatatttgaagctacattcttaccttgagtggatattcagcacctcaatattgtcccctttcaagacatccttcaatgaaatt 1600491  T
Q  452 agactt 457  Q
    ||||||    
T  1600490 agactt 1600485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 271 - 457
Target Start/End: Original strand, 8535219 - 8535402
Alignment:
Q  271 gaagtccctttgaaaacttgtcttatgattaaaattaattactatgactt-gtatgggaacatcaaccatcaatcagattcaaacgccaataaaaataaa 369  Q
    ||||| |||||||| ||| |||||||||||||||| |||||||||||||| ||| |||| ||||||||||||    |||||||  || ||||||||||||    
T  8535219 gaagttcctttgaatactcgtcttatgattaaaatcaattactatgactttgtaagggagcatcaaccatca----gattcaattgcaaataaaaataaa 8535314  T
Q  370 atatttgaagctacattcttaccttgagtggatattcagcacctcaatattgtcccctttcaagacatccttcaatgaaattagactt 457  Q
    || || ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||    
T  8535315 atcttagaagctacattcttaccttgagtggatattcagaacctcaatattgtcacctttcaaaacatccttcaatgaaattagactt 8535402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 362 - 457
Target Start/End: Complemental strand, 9075020 - 9074925
Alignment:
Q  362 aaaataaaatatttgaagctacattcttaccttgagtggatattcagcacctcaatattgtcccctttcaagacatccttcaatgaaattagactt 457  Q
    |||||||| |||| ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||    
T  9075020 aaaataaagtattagaagctacattcttaccttgagtggatattcagcacctcgatattgtctcctttcaagacatccttcaatgaaattagactt 9074925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 357 - 457
Target Start/End: Original strand, 8636668 - 8636768
Alignment:
Q  357 caataaaaataaaatatttgaagctacattcttaccttgagtggatattcagcacctcaatattgtcccctttcaagacatccttcaatgaaattagact 456  Q
    |||| |||||||||| || ||| ||||||||| ||||||||||||||||||||||||| |||||||| ||||||| ||||||||||||||| ||||||||    
T  8636668 caatcaaaataaaatgttagaatctacattctaaccttgagtggatattcagcacctcgatattgtctcctttcacgacatccttcaatgagattagact 8636767  T
Q  457 t 457  Q
    |    
T  8636768 t 8636768  T

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Target: chr5; HSP #5
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 276 - 457
Target Start/End: Complemental strand, 8548478 - 8548296
Alignment:
Q  276 ccctttgaaaacttgtcttatgattaaaattaattactatgacttgtatgggaacatcaaccatca-atcagattcaaacgccaataa-aaataaaatat 373  Q
    ||||||||| |||  ||||||||||||||||||||||||||| || ||||||| |||||||||||| || |||||      |||||   |||||  | ||    
T  8548478 ccctttgaatactcatcttatgattaaaattaattactatgatttttatgggagcatcaaccatcagattagattgc----ccaatctgaaatattaaat 8548383  T
Q  374 ttgaagctaca---ttcttaccttgagtggatattcagcacctcaatattgtcccctttcaagacatccttcaatgaaattagactt 457  Q
    | |||||||||   ||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||||||||    
T  8548382 tagaagctacaatattcttactttgagtggatattcagcacctcaatattgtctcctttcatgacatccttcaatgagattagactt 8548296  T

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Target: chr5; HSP #6
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 378 - 457
Target Start/End: Original strand, 8677627 - 8677706
Alignment:
Q  378 agctacattcttaccttgagtggatattcagcacctcaatattgtcccctttcaagacatccttcaatgaaattagactt 457  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||  |||||||||||||| |||||||||    
T  8677627 agctacattcttaccttgagtggatattcagcacctcaatattgtctcctttcacaacatccttcaatgagattagactt 8677706  T

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Target: chr5; HSP #7
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 357 - 457
Target Start/End: Original strand, 8644013 - 8644113
Alignment:
Q  357 caataaaaataaaatatttgaagctacattcttaccttgagtggatattcagcacctcaatattgtcccctttcaagacatccttcaatgaaattagact 456  Q
    |||| |||||||||| || | ||||||||||||||||||||||||||||||||| |||| ||||||| |||||||  |||||||||||||| ||||||||    
T  8644013 caatcaaaataaaatcttagcagctacattcttaccttgagtggatattcagcatctcagtattgtctcctttcacaacatccttcaatgagattagact 8644112  T
Q  457 t 457  Q
    |    
T  8644113 t 8644113  T

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Target: chr5; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 3 - 58
Target Start/End: Original strand, 1600939 - 1600994
Alignment:
Q  3 aatggacagttgttgtaatgtcagttatttgaacgttcttagttgctaagtagtaa 58  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1600939 aatggacagttgttgtaatgtcagttatttgaacgttcttagttgctaagtagtaa 1600994  T

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Target: chr5; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 272 - 457
Target Start/End: Original strand, 8528681 - 8528847
Alignment:
Q  272 aagtccctttgaaaacttgtcttatgattaaaattaattactatgacttgtatgggaacatcaaccatcaatcagattcaaacgccaataaaaataaaat 371  Q
    ||||||||||||| ||| | || ||||||| ||| ||||||||||||||||| || | ||||||||||||    |||||||  |||||||||||||||||    
T  8528681 aagtccctttgaatactcgactcatgattacaatcaattactatgacttgtaaggaagcatcaaccatca----gattcaattgccaataaaaataaaat 8528776  T
Q  372 atttgaagctacattcttaccttgagtggatattcagcacctcaatattgtcccctttcaagacatccttcaatgaaattagactt 457  Q
     ||               ||||||||||||||||||| |||||||||||| | |||||||| ||||||||||||||||||||||||    
T  8528777 ttt---------------accttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagactt 8528847  T

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Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 273 - 323
Target Start/End: Complemental strand, 9075074 - 9075024
Alignment:
Q  273 agtccctttgaaaacttgtcttatgattaaaattaattactatgacttgta 323  Q
    ||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  9075074 agtccctttgaaaactcatcttatgattaaaattaattactatgacttgta 9075024  T

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Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 169 - 214
Target Start/End: Complemental strand, 8548643 - 8548598
Alignment:
Q  169 ataaacaacaccataaatatattagttgtaaaagcaattgattgag 214  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||    
T  8548643 ataaacaacaccataaatatattagttgtaaaagcaaatgattgag 8548598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 168 - 228
Target Start/End: Original strand, 8535063 - 8535123
Alignment:
Q  168 tataaacaacaccataaatatattagttgtaaaagcaattgattgaggaaagatcacaact 228  Q
    ||||||||||  |||||||||||||||||||||||||| ||||||| |||| |||||||||    
T  8535063 tataaacaacttcataaatatattagttgtaaaagcaaatgattgacgaaacatcacaact 8535123  T

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Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 362 - 457
Target Start/End: Complemental strand, 2905247 - 2905149
Alignment:
Q  362 aaaataaaatatttgaagctacattcttaccttgagtggatattcagca---cctcaatattgtcccctttcaagacatccttcaatgaaattagactt 457  Q
    |||||||||||||  ||||||||||  |||||||||| ||| |||||||   |||||| |||||| || |||| |||||| |||||||| |||||||||    
T  2905247 aaaataaaatattataagctacattactaccttgagtagatgttcagcacctcctcaacattgtctccattcacgacatctttcaatgatattagactt 2905149  T

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Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 357 - 457
Target Start/End: Original strand, 8641180 - 8641275
Alignment:
Q  357 caataaaaataaaatatttgaagctacattcttaccttgagtggatattcagcacctcaatattgtcccctttcaagacatccttcaatgaaattagact 456  Q
    ||||| ||||||||| || ||||| |||||||| ||||||||| ||||| | ||| ||||||||    ||||||| ||||||||||||||| ||||||||    
T  8641180 caatacaaataaaat-ttagaagcaacattcttgccttgagtgaatatttaacacttcaatatt----cctttcacgacatccttcaatgagattagact 8641274  T

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Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 226 - 275
Target Start/End: Complemental strand, 8548565 - 8548516
Alignment:
Q  226 acttaacaacaagtcttcctttctccaaacagaatggcaaaataggaagt 275  Q
    ||||||||||||| |||||||| |||||| |||||| |||||||||||||    
T  8548565 acttaacaacaagccttcctttatccaaatagaatgccaaaataggaagt 8548516  T

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Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 53 - 136
Target Start/End: Original strand, 8528383 - 8528466
Alignment:
Q  53 tagtaacaaaagattgcgtccacgtgannnnnnncctattaactatcagagccagatatgtaattaaaggtggtagatattaga 136  Q
    |||||||||||||||| |||||| |||       || ||||||||| | ||||| | |||||||||||||||||| ||||||||    
T  8528383 tagtaacaaaagattgtgtccacatgatttttttcccattaactattaaagccaaagatgtaattaaaggtggtatatattaga 8528466  T

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Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 8534894 - 8534836
Alignment:
Q  1 tgaatggacagttgttgtaatgtcagttatttgaacgttc-ttagttgctaagtagtaa 58  Q
    ||||||||||||||||||||| ||||||||||| |  ||| |||||||||| |||||||    
T  8534894 tgaatggacagttgttgtaatctcagttatttggatcttctttagttgctaggtagtaa 8534836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 90 - 139
Target Start/End: Original strand, 8534985 - 8535036
Alignment:
Q  90 attaactatcagagccagata--tgtaattaaaggtggtagatattagataa 139  Q
    ||||||||||||||||| | |  ||||||||||||||||| |||||||||||    
T  8534985 attaactatcagagccacaaagatgtaattaaaggtggtatatattagataa 8535036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 96; Significance: 7e-47; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 283 - 452
Target Start/End: Complemental strand, 48362231 - 48362064
Alignment:
Q  283 aaaacttgtcttatgattaaaattaattactatgacttgtatgggaacatcaaccatcaatcagattcaaacgccaataaaaataaaatattt--gaagc 380  Q
    |||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||||    |||||||  ||||||||||||||| ||||   |||||    
T  48362231 aaaaattgtcttatgattaaaattgattactatgacttgtatgagaacatcaaccatca----gattcaattgccaataaaaataaagtattatggaagc 48362136  T
Q  381 tacattcttaccttgagtggatattcagcacctcaatattgtcccctttcaagacatccttcaatgaaatta 452  Q
    ||||||||||||||||||||| ||||| |||||| ||||| || ||||||||||||||||||||||||||||    
T  48362135 tacattcttaccttgagtggacattcaacacctccatattatctcctttcaagacatccttcaatgaaatta 48362064  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 90 - 158
Target Start/End: Complemental strand, 48362309 - 48362242
Alignment:
Q  90 attaactatcagagccagatatgtaattaaaggtggtagatattagataaccaaaaaaactataattat 158  Q
    ||||||||||||||| ||| ||||||||||||||||||||||||||||||  |||| ||||| ||||||    
T  48362309 attaactatcagagc-agagatgtaattaaaggtggtagatattagataaggaaaataactaaaattat 48362242  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 48362400 - 48362457
Alignment:
Q  1 tgaatggacagttgttgtaatgtcagttatttgaacgttcttagttgctaagtagtaa 58  Q
    |||||||  |||||||||||||||||||||||| || |||||||||| ||| ||||||    
T  48362400 tgaatgggaagttgttgtaatgtcagttatttggaccttcttagttggtaattagtaa 48362457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0627 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 384 - 457
Target Start/End: Original strand, 4488 - 4561
Alignment:
Q  384 attcttaccttgagtggatattcagcacctcaatattgtcccctttcaagacatccttcaatgaaattagactt 457  Q
    |||||||||||||||||||||||| ||||||||||||||| ||||||| | ||||||||||||| |||||||||    
T  4488 attcttaccttgagtggatattcaacacctcaatattgtctcctttcacggcatccttcaatgagattagactt 4561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 8e-22; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 388 - 457
Target Start/End: Original strand, 9442939 - 9443008
Alignment:
Q  388 ttaccttgagtggatattcagcacctcaatattgtcccctttcaagacatccttcaatgaaattagactt 457  Q
    ||||||||||||||||||||| |||||||||||| | |||||||| ||||||||||||||||||||||||    
T  9442939 ttaccttgagtggatattcagaacctcaatattgactcctttcaaaacatccttcaatgaaattagactt 9443008  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 53 - 136
Target Start/End: Original strand, 9442533 - 9442616
Alignment:
Q  53 tagtaacaaaagattgcgtccacgtgannnnnnncctattaactatcagagccagatatgtaattaaaggtggtagatattaga 136  Q
    |||||||||||||||| ||||||||||       || ||||||||| | ||||| | |||||||||||||||||| ||||||||    
T  9442533 tagtaacaaaagattgtgtccacgtgatttttttcccattaactattaaagccaaagatgtaattaaaggtggtatatattaga 9442616  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 272 - 371
Target Start/End: Original strand, 9442842 - 9442937
Alignment:
Q  272 aagtccctttgaaaacttgtcttatgattaaaattaattactatgacttgtatgggaacatcaaccatcaatcagattcaaacgccaataaaaataaaat 371  Q
    ||||||||||||| |||  ||| ||||||| ||| |||||||||||||||||  | | ||||||||    |||||||||||  |||||||||||||||||    
T  9442842 aagtccctttgaatactcatctcatgattacaatcaattactatgacttgtaaagaagcatcaacc----atcagattcaattgccaataaaaataaaat 9442937  T

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Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 384 - 457
Target Start/End: Original strand, 16716175 - 16716248
Alignment:
Q  384 attcttaccttgagtggatattcagcacctcaatattgtcccctttcaagacatccttcaatgaaattagactt 457  Q
    |||||||||||||||||||||||| |||||||||||| || ||||||| | ||||||||||||| |||||||||    
T  16716175 attcttaccttgagtggatattcaacacctcaatattctctcctttcacggcatccttcaatgagattagactt 16716248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 387 - 457
Target Start/End: Original strand, 5130637 - 5130707
Alignment:
Q  387 cttaccttgagtggatattcagcacctcaatattgtcccctttcaagacatccttcaatgaaattagactt 457  Q
    ||||||||||||| ||||||||||||||||||||||| |||||||  | |||||| | |||||||||||||    
T  5130637 cttaccttgagtgaatattcagcacctcaatattgtctcctttcacaatatcctttagtgaaattagactt 5130707  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 168 - 227
Target Start/End: Original strand, 5130335 - 5130393
Alignment:
Q  168 tataaacaacaccataaatatattagttgtaaaagcaattgattgaggaaagatcacaac 227  Q
    ||||||||||||||| |||| ||||||||| ||||||||||||||| |||| ||||||||    
T  5130335 tataaacaacaccatcaatagattagttgtgaaagcaattgattgatgaaa-atcacaac 5130393  T

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