View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21529_high_4 (Length: 331)
Name: NF21529_high_4
Description: NF21529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21529_high_4 |
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| [»] chr4 (19 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 19)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 9 - 331
Target Start/End: Original strand, 26192487 - 26192809
Alignment:
| Q |
9 |
gaaatgaatggagtcggcctcnnnnnnngagaggtaaggagaaacttcttggaccggaaattggagggtcattacatttccaatgtgaagatcatccaaa |
108 |
Q |
| |
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|||| |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |
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| T |
26192487 |
gaaaggaatggagtcggcctctttttttgagaggtatggagaaacttcttggaccggaaattggagggtcattacatttccaacgtgaagatcatcaaaa |
26192586 |
T |
|
| Q |
109 |
ctgaaatatcctgtcttgaaagcttctgtatgatccaaattaggaattgggagatcttctacggagttggtagatgggaggccttttggatcaatgacat |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26192587 |
ctgaaatatcctgtcttgaaagcttctgtatgatccaagttaggaattgggagatcttctacggagttggtagatgggaggccttttggatcaatgacat |
26192686 |
T |
|
| Q |
209 |
atttgtacccagtaatgtaatttggttgcttggtttcatgtttaccatattgagttatgtaaggaccattggattcatggttatgggtcctatacccagt |
308 |
Q |
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|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |
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| T |
26192687 |
atttgtacccagaaatgtaatttggttgcttggtttcatgtttaccatattgagttatgtaaggaccattggattcatggttatgggtcatatacccggt |
26192786 |
T |
|
| Q |
309 |
aatgtaattttgttgcttggttt |
331 |
Q |
| |
|
|||||||||| |||||||||||| |
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|
| T |
26192787 |
aatgtaatttagttgcttggttt |
26192809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 37 - 180
Target Start/End: Original strand, 26176326 - 26176469
Alignment:
| Q |
37 |
gagaggtaaggagaaacttcttggaccggaaattggagggtcattacatttccaatgtgaagatcatccaaactgaaatatcctgtcttgaaagcttctg |
136 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
26176326 |
gagaggtaaggagaaacttcttggaccggaaattggaaggtcattacatttccaacgtgaagatcatccaaactaaaatatcctgtcttgaaagcttctg |
26176425 |
T |
|
| Q |
137 |
tatgatccaaattaggaattgggagatcttctacggagttggta |
180 |
Q |
| |
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|||||||||| ||||||||||||||||||||| ||||||||||| |
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|
| T |
26176426 |
tatgatccaagttaggaattgggagatcttctgcggagttggta |
26176469 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 214 - 331
Target Start/End: Original strand, 26192779 - 26192896
Alignment:
| Q |
214 |
tacccagtaatgtaatttggttgcttggtttcatgtttaccatattgagttatgtaaggaccattggattcatggttatgggtcctatacccagtaatgt |
313 |
Q |
| |
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||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
26192779 |
tacccggtaatgtaatttagttgcttggtttcatgtttaccatattgagttatgtaaggaccattggattcatggttatgggtcctatacccggtaatgt |
26192878 |
T |
|
| Q |
314 |
aattttgttgcttggttt |
331 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
26192879 |
aattttgttgcttggttt |
26192896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 214 - 328
Target Start/End: Original strand, 26176558 - 26176672
Alignment:
| Q |
214 |
tacccagtaatgtaatttggttgcttggtttcatgtttaccatattgagttatgtaaggaccattggattcatggttatgggtcctatacccagtaatgt |
313 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |
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| T |
26176558 |
tacccggtaatgtaatttggttgcttggtttcatgtttaccatattgagttatgtaaggaccattggattcatggttatgggtcttatacccgataatgt |
26176657 |
T |
|
| Q |
314 |
aattttgttgcttgg |
328 |
Q |
| |
|
|||||||||| |||| |
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|
| T |
26176658 |
aattttgttgtttgg |
26176672 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 214 - 318
Target Start/End: Original strand, 26192866 - 26192970
Alignment:
| Q |
214 |
tacccagtaatgtaatttggttgcttggtttcatgtttaccatattgagttatgtaaggaccattggattcatggttatgggtcctatacccagtaatgt |
313 |
Q |
| |
|
||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
26192866 |
tacccggtaatgtaattttgttgcttggtttcatgtttaccatattgagttatgtaaggaccattggattcatggttatgggtcatatacccagtaatgt |
26192965 |
T |
|
| Q |
314 |
aattt |
318 |
Q |
| |
|
||||| |
|
|
| T |
26192966 |
aattt |
26192970 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 217 - 331
Target Start/End: Original strand, 26176474 - 26176588
Alignment:
| Q |
217 |
ccagtaatgtaatttggttgcttggtttcatgtttaccatattgagttatgtaaggaccattggattcatggttatgggtcctatacccagtaatgtaat |
316 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| ||||| ||||||||||| || ||||||| ||||||||||||||||||||| |||||||||| |
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| T |
26176474 |
ccagtaatgtaatttggttgcttgccttcatgtttatcatatgaagttatgtaagctccgttggatttatggttatgggtcctatacccggtaatgtaat |
26176573 |
T |
|
| Q |
317 |
tttgttgcttggttt |
331 |
Q |
| |
|
|| |||||||||||| |
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|
| T |
26176574 |
ttggttgcttggttt |
26176588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 44 - 161
Target Start/End: Original strand, 26180243 - 26180361
Alignment:
| Q |
44 |
aaggagaaacttcttggaccggaaattggagggtcattacatttccaatgtgaagatcatccaaactgaaatatcctgtcttgaaagcttctgtatgatc |
143 |
Q |
| |
|
|||||||||| ||||||| |||||||| ||||||||||||||||||| | ||||||||||||| ||||| ||||| |||||||||||||||| |||| |
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|
| T |
26180243 |
aaggagaaaccacttggacgggaaattgaagggtcattacatttccaacataaagatcatccaaattgaaaaatcctaccttgaaagcttctgtacgatc |
26180342 |
T |
|
| Q |
144 |
caaattagga-attgggag |
161 |
Q |
| |
|
||| |||||| |||||||| |
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|
| T |
26180343 |
caagttaggagattgggag |
26180361 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 51 - 143
Target Start/End: Complemental strand, 25648453 - 25648361
Alignment:
| Q |
51 |
aacttcttggaccggaaattggagggtcattacatttccaatgtgaagatcatccaaactgaaatatcctgtcttgaaagcttctgtatgatc |
143 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||| |||| | ||| ||||||||||||||| ||||| |
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|
| T |
25648453 |
aactttttggaccggaaattggagggccattacatttccaacatgaagatcatccaaaccgaaaaagcctaacttgaaagcttctgtgtgatc |
25648361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 210 - 284
Target Start/End: Original strand, 26162957 - 26163031
Alignment:
| Q |
210 |
tttgtacccagtaatgtaat-ttggttgcttggtttcatgtttaccatattgagttatgtaaggaccattggattc |
284 |
Q |
| |
|
||||||||||||| |||||| |||||| ||||| |||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
26162957 |
tttgtacccagtagtgtaatcttggtt-cttggcttcatgtttaccatattgagttatgtaaggtccattggattc |
26163031 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 55 - 146
Target Start/End: Original strand, 26162457 - 26162548
Alignment:
| Q |
55 |
tcttggaccggaaattggagggtcattacatttccaatgtgaagatcatccaaactgaaatatcctgtcttgaaagcttctgtatgatccaa |
146 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||||| | ||||||||||||| ||||| ||||| ||||||||||||||| ||||||| |
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|
| T |
26162457 |
tcttggatgggaaattgaagggtcattacatttccaacataaagatcatccaaattgaaaaatcctaccttgaaagcttctgtgcgatccaa |
26162548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 211 - 281
Target Start/End: Original strand, 26162817 - 26162887
Alignment:
| Q |
211 |
ttgtacccagtaatgtaatttggttgcttggtttcatgtttaccatattgagttatgtaaggaccattgga |
281 |
Q |
| |
|
|||||||| ||| |||||| ||| | ||||| |||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
26162817 |
ttgtacccggtagtgtaatctgggttcttggcttcatgtttaccatattgagttatgtaaggtccattgga |
26162887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 55 - 120
Target Start/End: Original strand, 25929474 - 25929539
Alignment:
| Q |
55 |
tcttggaccggaaattggagggtcattacatttccaatgtgaagatcatccaaactgaaatatcct |
120 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||| ||||| |
|
|
| T |
25929474 |
tcttggattggaaattggagggtcattacatttccaacatgaagatcatccaaattgaaaaatcct |
25929539 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 211 - 281
Target Start/End: Original strand, 26163240 - 26163310
Alignment:
| Q |
211 |
ttgtacccagtaatgtaatttggttgcttggtttcatgtttaccatattgagttatgtaaggaccattgga |
281 |
Q |
| |
|
|||||||| ||| |||||| ||| | |||| |||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
26163240 |
ttgtacccggtagtgtaatctgggttcttgtcttcatgtttaccatattgagttatgtaaggtccattgga |
26163310 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 231 - 316
Target Start/End: Original strand, 26163455 - 26163540
Alignment:
| Q |
231 |
tggttgcttggtttcatgtttaccatattgagttatgtaaggaccattggattcatggttatgggtcctatacccagtaatgtaat |
316 |
Q |
| |
|
|||||| |||| ||||||| ||||||| |||||||||||| ||||||||||||||| |||||||| | ||||| ||| |||||| |
|
|
| T |
26163455 |
tggttgtttggcttcatgtctaccataggcagttatgtaaggtccattggattcatgggtatgggtcttgtacccggtagtgtaat |
26163540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 210 - 281
Target Start/End: Original strand, 26163380 - 26163451
Alignment:
| Q |
210 |
tttgtacccagtaatgtaatttggttgcttggtttcatgtttaccatattgagttatgtaaggaccattgga |
281 |
Q |
| |
|
||||||||| ||| |||||| || | ||||| | |||||||||||||||||||||||||||| |||||||| |
|
|
| T |
26163380 |
tttgtacccggtagtgtaatctgcgtccttggctacatgtttaccatattgagttatgtaaggtccattgga |
26163451 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 316
Target Start/End: Original strand, 26162757 - 26162835
Alignment:
| Q |
238 |
ttggtttcatgtttaccatattgagttatgtaaggaccattggattcatggttatgggtcctatacccagtaatgtaat |
316 |
Q |
| |
|
|||| ||||||||||||||| |||||||||||| |||||||||||||| |||||||| | ||||| ||| |||||| |
|
|
| T |
26162757 |
ttggcttcatgtttaccataggcagttatgtaaggttcattggattcatgggtatgggtcttgtacccggtagtgtaat |
26162835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 214 - 272
Target Start/End: Original strand, 26192953 - 26193011
Alignment:
| Q |
214 |
tacccagtaatgtaatttggttgcttggtttcatgtttaccatattgagttatgtaagg |
272 |
Q |
| |
|
|||||||||||||||||| ||| |||| |||||||||||||||| |||||||||||| |
|
|
| T |
26192953 |
tacccagtaatgtaatttagttaattggcttcatgtttaccatatccagttatgtaagg |
26193011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 279
Target Start/End: Original strand, 26163663 - 26163731
Alignment:
| Q |
211 |
ttgtacccagtaatgtaatttggttgcttggtttcatgtttaccatattgagttatgtaaggaccattg |
279 |
Q |
| |
|
|||||||| ||| ||||| ||| | ||||| ||||||||||| |||||||||||||||||| |||||| |
|
|
| T |
26163663 |
ttgtacccggtagtgtaacctggattcttggcttcatgtttactatattgagttatgtaaggtccattg |
26163731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 281
Target Start/End: Original strand, 26163099 - 26163169
Alignment:
| Q |
211 |
ttgtacccagtaatgtaatttggttgcttggtttcatgtttaccatattgagttatgtaaggaccattgga |
281 |
Q |
| |
|
||||||| ||| |||||| ||| | ||||| ||||||| |||||||||||||||||||||| | |||||| |
|
|
| T |
26163099 |
ttgtaccgggtagtgtaatctgggttcttggcttcatgtgtaccatattgagttatgtaaggtctattgga |
26163169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 61 - 114
Target Start/End: Complemental strand, 32189290 - 32189237
Alignment:
| Q |
61 |
accggaaattggagggtcattacatttccaatgtgaagatcatccaaactgaaa |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||| |||| ||||| |
|
|
| T |
32189290 |
accggaaattggagggtcattacatttccaacacgaagatcattcaaattgaaa |
32189237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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