View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21529_high_5 (Length: 326)
Name: NF21529_high_5
Description: NF21529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21529_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 8812715 - 8813025
Alignment:
| Q |
1 |
cttaatgaatcgctgtaccaaaagacccttgcattattgcatctaaaactaaaacctactgtaactaaatcatctagtgtgatgtagcttgatcatcccc |
100 |
Q |
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|||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
8812715 |
cttaatgaatcgctgtcccaaaagacctttgcattattgcatctaaaactaaaacctactgtaactaaatcatctagtgtgatgtagcttgatcaacccc |
8812814 |
T |
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| Q |
101 |
gggataatcatgaatagacccagaataatcagacatgcaaacagactcaaaaagttcatggcaacctttacttgcacataaaaaatattaaaaacaaagt |
200 |
Q |
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| T |
8812815 |
gggataatcatga-tagacccaaaataatcagacatgcaaacagactcaaaaagttcatggcaacctttacttgcacataaaaaatattaaaaacaaagt |
8812913 |
T |
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| Q |
201 |
ctaaaagaattcacaataatgttattaccagagcgtcaggatgaagtctataatcaatatacatggtccaatgatcttcgccaacttcactcgagaattt |
300 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8812914 |
ctaaaacaattcacaataatgttattaccagagcgtcaggatgaagtctataatcaatatacatggtccaatgatcttcgccaacttcactcgagaattt |
8813013 |
T |
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| Q |
301 |
ctctatattttg |
312 |
Q |
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|||||||||||| |
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| T |
8813014 |
ctctatattttg |
8813025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 4773918 - 4773844
Alignment:
| Q |
1 |
cttaatgaatcgctgtaccaaaagacccttgcattattgcatctaaaactaaaacctactgtaactaaatcatct |
75 |
Q |
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||||||| ||| || |||||||||||| |||||||||||||| ||||||||||||||||| | ||||||||||| |
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| T |
4773918 |
cttaatggatcactataccaaaagacctttgcattattgcatataaaactaaaacctacttcatctaaatcatct |
4773844 |
T |
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