View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21529_high_8 (Length: 308)
Name: NF21529_high_8
Description: NF21529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21529_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 20 - 233
Target Start/End: Complemental strand, 32502403 - 32502187
Alignment:
| Q |
20 |
cttgagactacacattcaaacttagaaaat---gtgaagatgttatttacaagagttcttgtaaattcaagcattgagtaaccattatctatgcaacatt |
116 |
Q |
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| T |
32502403 |
cttgagactacacattcaaacttagaaaataatgtgaacatgttatttacaagagtacttgtaaattcaagcattgactaaccattatctatgcagcatt |
32502304 |
T |
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| Q |
117 |
cttctcgtataaataggaggaattgcaaggagttccataattctaagagttccaatccaagagtgatggtgagatatagagttctagaaattctcttcga |
216 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |
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| T |
32502303 |
cttctcgtataaataggaggaattgcaaggagtttcataattctaagagttccaatccaagagtgatagcgagatatagagttctagaaattctcttcga |
32502204 |
T |
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| Q |
217 |
gagaaagagttttgttt |
233 |
Q |
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||||||||||||||||| |
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| T |
32502203 |
gagaaagagttttgttt |
32502187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 45 - 102
Target Start/End: Complemental strand, 24983597 - 24983540
Alignment:
| Q |
45 |
aaaatgtgaagatgttatttacaagagttcttgtaaattcaagcattgagtaaccatt |
102 |
Q |
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| T |
24983597 |
aaaatgtgaagatgtgatttacaagagttcttctaaattgaagtattcactaaccatt |
24983540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 105
Target Start/End: Original strand, 19003440 - 19003519
Alignment:
| Q |
24 |
agactacacattcaaacttagaaaatgtgaagatgttatttacaagagttcttgtaaattcaagcattgagtaaccattatc |
105 |
Q |
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| T |
19003440 |
agactacacattcaaacata--aaatgtgaagatgtgattaacaagagttctagtgaatccaagtatctactaaccattatc |
19003519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 48
Target Start/End: Original strand, 34071325 - 34071353
Alignment:
| Q |
20 |
cttgagactacacattcaaacttagaaaa |
48 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
34071325 |
cttgagactacacattcaaacttagaaaa |
34071353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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