View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21529_low_15 (Length: 218)
Name: NF21529_low_15
Description: NF21529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21529_low_15 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 156; Significance: 5e-83; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 16 - 186
Target Start/End: Original strand, 4617738 - 4617911
Alignment:
| Q |
16 |
aatatagaatatgatatatttaagattggtatataaaaattaaaataaattttgtttgagggtataaattaaacatcattattagttaaagaaaaacaaa |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4617738 |
aatatagaatatgatatatttaagattggtatataaaaattaaaataaattttgtttgagggtataaattaaacatcattattagttaaagaaaaacaaa |
4617837 |
T |
|
| Q |
116 |
tctatcctgttaagaatcgttaattgtgttttgctgatt---gtggtatcacggaggagctcacaaaacaaaac |
186 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
4617838 |
tctatcctgttaagaatcgttaattgtgttttgctgattgtggtggtatcacggaggagctcagaaaacaaaac |
4617911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 203
Target Start/End: Original strand, 4617910 - 4617938
Alignment:
| Q |
175 |
acaaaacaaaacccaaacaaaatattatt |
203 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
4617910 |
acaaaacaaaacccaaacaaaatattatt |
4617938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University