View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21529_low_6 (Length: 320)
Name: NF21529_low_6
Description: NF21529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21529_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 43402094 - 43402407
Alignment:
| Q |
1 |
tccactgtcaatcagaaatcacatccttacatatatttccactgtcttagtttgnnnnnnncaatcagtggggaggagttttgtgaatcagaaatattat |
100 |
Q |
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| T |
43402094 |
tccactgtcaatcagaaatcacatccttacatatatttccactgttttagtttgtttttttcaatcagtggggaggggttttgtgaatcagaaatattgt |
43402193 |
T |
|
| Q |
101 |
cagtaacatgttagtataggctacggttaaagaatgctaatgtttgatatacaaaaaatgagaaaaatctagtcattgtaatttttgttatgcatgtgaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43402194 |
cagtaacatgttagtataggctacggttaaagaatgctaatgtttgatatacaaaaaatgagaaaaatctagtcattgtaatttttgttatgcatgtgaa |
43402293 |
T |
|
| Q |
201 |
cggattaccaaaataaaaacatttttatatggatatattaagcataccactatccaagtctagtgctccatggaattcccattcataattttactatagg |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| ||| |
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| T |
43402294 |
cggattaccaaaataaaaacatttttatatggatatattaagcataccactatccaagtcttgtgctcaatggaattcccattcataattttactacagg |
43402393 |
T |
|
| Q |
301 |
agagagttcttaag |
314 |
Q |
| |
|
|||||||||||||| |
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| T |
43402394 |
agagagttcttaag |
43402407 |
T |
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