View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2152_high_1 (Length: 254)
Name: NF2152_high_1
Description: NF2152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2152_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 101; Significance: 4e-50; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 18 - 151
Target Start/End: Complemental strand, 22536645 - 22536506
Alignment:
| Q |
18 |
catctaattcatcaggaaaaataccaaggctattactactttcctcatgagtcatgatagagtaata------tataggtgacattgagcatataagtta |
111 |
Q |
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| T |
22536645 |
catctaattcatcaggaaaaataccaaggctattactactttcctcatcagtcctgatagagtaatatatatatataggtgacatttagcatataagtta |
22536546 |
T |
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| Q |
112 |
tacaaattcaagcagtttccaccaagtaattggatatata |
151 |
Q |
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| T |
22536545 |
tacaaattcaagcagttgccaccaagtaattggatatata |
22536506 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 153 - 250
Target Start/End: Complemental strand, 22535420 - 22535323
Alignment:
| Q |
153 |
ttgtggcagttaaaaacattgggttaggaagcatttcatctttcttatggatacatatatttgtttttgttgtcaatgatttgcatttcatctcactc |
250 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |
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| T |
22535420 |
ttgtggcagttaaaaacattgggttaggaagcatttcatctttcttatggatacgtatatttgtttttgttgtcaatgatttgcatttcatatcactc |
22535323 |
T |
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