View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2152_high_2 (Length: 227)
Name: NF2152_high_2
Description: NF2152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2152_high_2 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 18196724 - 18196948
Alignment:
| Q |
1 |
gttgaaaaaggaggtgacatggatgaaaaagggtaggcagaagagaacaacaatatatctttacaattaagtgtatgaatccatctgcacaataagatct |
100 |
Q |
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| T |
18196724 |
gttgaaaaaggaggtgacatggatgagaaagggtaggcagaagagaacaacactat--ctttacaattaagtgtgtgaatccatctgcacactaagatct |
18196821 |
T |
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| Q |
101 |
cacaggccacaaaaatttgtggctcacaaaacttccacttttctgatgtggcattgctttccaactttttgacctttataaaacatcttcacagaaacac |
200 |
Q |
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| T |
18196822 |
cacaggccacaaaaatttgtggctcacaaaacttccacttttctgatgtggcattgctttccaactttttgacctttataaaacttcttcacagaaacac |
18196921 |
T |
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| Q |
201 |
ataagccattgtacctccctatctctt |
227 |
Q |
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| T |
18196922 |
ataaaccattgtacctccctatctctt |
18196948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 18192190 - 18192413
Alignment:
| Q |
1 |
gttgaaaaaggaggtgacatggatgaaaaagggtagg-cagaagagaacaacaatatatctttacaattaagtgtatgaatccatctgcacaataagatc |
99 |
Q |
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| T |
18192190 |
gttgaaaaaggaggtgacatggatgaaaaagggtaggacagaaaagaaaaacactat--ctttacaattacgtgggtgaatccagctgcacactaagatc |
18192287 |
T |
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| Q |
100 |
tcacaggccacaaaaatttgtggctcacaaaacttccacttttctgatgtggcattgctttccaactttttgacctttataaaacatcttcacagaaaca |
199 |
Q |
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| T |
18192288 |
tcacag-ccacagcaatttgtggctcacaaaacttccacttttctgatgtggcattgctttccaactttttgacctttataaaacttcttcacataaaca |
18192386 |
T |
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| Q |
200 |
cataagccattgtacctccctatctct |
226 |
Q |
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| T |
18192387 |
cataaaccatagtacctccctctctct |
18192413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 76 - 226
Target Start/End: Original strand, 18187249 - 18187402
Alignment:
| Q |
76 |
tgaatccatctgcacaataagatctcacaggccacaaaaatttgtggctcacaaaacttccacttttctgatgtggcattgct---ttccaactttttga |
172 |
Q |
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| T |
18187249 |
tgaatccagctgaacactaagatctcataggccaaaacaatttgtggctcacaaaactttcccttttctgatgtggcttggctttcttctaactttttga |
18187348 |
T |
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| Q |
173 |
cctttataaaacatcttcacagaaacacataagccattgtacctccctatctct |
226 |
Q |
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| T |
18187349 |
cctatataaaacctcttcacataaacacataaaccattgtacctccctctctct |
18187402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 97 - 226
Target Start/End: Original strand, 18228912 - 18229036
Alignment:
| Q |
97 |
atctcacaggccacaaaaatttgtggctcacaaaacttccacttttctgatgtggcattgctttccaactttttgacctttataaaa---catcttcaca |
193 |
Q |
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| T |
18228912 |
atctcataggcca-aaaaatttgtggctcacaaaactttcccttttcgtatgtg-----gctttctaactttttgacctttatgaaacctcttcttcaca |
18229005 |
T |
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| Q |
194 |
gaaacacataagccattgtacctccctatctct |
226 |
Q |
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| T |
18229006 |
taaacac--aaaccattgtacctccctctctct |
18229036 |
T |
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