View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2152_low_3 (Length: 283)
Name: NF2152_low_3
Description: NF2152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2152_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 25 - 267
Target Start/End: Original strand, 14119370 - 14119612
Alignment:
| Q |
25 |
acttgatttgtacatgttagcatactcgaatctcactttcaacaagtcgatttcagctcgagttacaattgctctgttgagtgaatcttcatcagttcct |
124 |
Q |
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| T |
14119370 |
acttgatttgtacatgttagcatactcgaatctcactttcaacaagtcgatttcagctcgagttacaatagctctgttgagtgaatcttcatcagttcct |
14119469 |
T |
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| Q |
125 |
agcccgacaatagaatcccttataacctgttgtgcatagaagtggaccaaaatgaaattgcaatcactttctgaatgagtaatcttgatatagcttcaaa |
224 |
Q |
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| T |
14119470 |
agcccgacaatagaatcccttataacctgttgggcatagaagtggaccaaaatgaaattgcaatcactttctgaatgagtaatcttgatatagcttcaaa |
14119569 |
T |
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| Q |
225 |
gaaattagagtaaatggatactttgatattttaatgatgaaat |
267 |
Q |
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| T |
14119570 |
gaaattagagtaaatggatactttgatattttaatgatgaaat |
14119612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 10 - 267
Target Start/End: Original strand, 14132437 - 14132695
Alignment:
| Q |
10 |
gacatcatcatcaagacttgatttgtacatgttagcatactcgaatctcactttcaacaagtcgatttcagctcgagttacaattgctctgttgagtgaa |
109 |
Q |
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| T |
14132437 |
gacatcatcatcaagacttgatttgtacatgttagcatactcgaatctcactttcaacaagtcgatttcagctcgagttacaatagctctgtttagtgaa |
14132536 |
T |
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| Q |
110 |
tcttcatcagttcctagcccgacaatagaatcccttataacctg-ttgtgcatagaagtggaccaaaatgaaattgcaatcactttctgaatgagtaatc |
208 |
Q |
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| T |
14132537 |
tcttcatcagttcctagcccgacaatagaatcccttataacctgtttgtgcatagaagtgaaccgaaatgagattgcaatcattttctgaatgagtaatc |
14132636 |
T |
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| Q |
209 |
ttgatatagcttcaaagaaattagagtaaatggatactttgatattttaatgatgaaat |
267 |
Q |
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| T |
14132637 |
ttgatatagcttcaaagaaattacagtaaatggatactttgatattttaaagatgaaat |
14132695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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