View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21530_high_11 (Length: 241)
Name: NF21530_high_11
Description: NF21530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21530_high_11 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 18 - 143
Target Start/End: Original strand, 37085042 - 37085167
Alignment:
| Q |
18 |
atgataccctgaaaaaagggccaagaaatccaccaggaatgacttcacaaacatagttacagatgtttgctggatcaagaatgctaaagaactttacacg |
117 |
Q |
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| T |
37085042 |
atgataccctgaaaaaagggccaagaaatccaccaggaatgacttcacaaacatagttacagatgcttgctggatcaagaatgctaaagaactttacacg |
37085141 |
T |
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| Q |
118 |
actcttgaatccttcatgatttcacc |
143 |
Q |
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| T |
37085142 |
actcttgaatccttcatgatttcacc |
37085167 |
T |
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Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 170 - 241
Target Start/End: Original strand, 37085195 - 37085266
Alignment:
| Q |
170 |
gaacaatctaagatcggaaaagatgttttacagaaagcataccttttggatatattgcatgcttactgcacc |
241 |
Q |
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| T |
37085195 |
gaacaatctaagaccggaaaagatgttttacagaaagcataccttttggatatattgcatgcttactgcacc |
37085266 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 205 - 241
Target Start/End: Original strand, 20673818 - 20673854
Alignment:
| Q |
205 |
agcataccttttggatatattgcatgcttactgcacc |
241 |
Q |
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| T |
20673818 |
agcataccttttggatatattgcatgcttattgcacc |
20673854 |
T |
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