View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21530_high_2 (Length: 560)
Name: NF21530_high_2
Description: NF21530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21530_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 350; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 141 - 549
Target Start/End: Original strand, 45974310 - 45974723
Alignment:
| Q |
141 |
ttagagcggcctgcaaccagaaatgttcaacacagaactaagaagttcaacctgtgaaaattaattcatgtttcagaacaatgaatgatattttggttac |
240 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45974310 |
ttagagaggcctgcaaccagaaatgttcaacacagaactaagaagttcaacctgtgaaaattaattcatgtttcagaacaatgaatgatattttggttac |
45974409 |
T |
|
| Q |
241 |
ctttggaagcatatatagcagaaatgtccattttattgttgtcaatcctttttgctttcacttttcctgtctcttcaatcat-----gttggtatcaacc |
335 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| ||||||||||||| |
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| T |
45974410 |
ctttggcagcatatatagcagaaatgtccattttattgttgtcattcctttttgctttcatttttcctgtctcttcaatcatgtcatgttggtatcaacc |
45974509 |
T |
|
| Q |
336 |
tttcccatcttcattcgaagttctaatcggttgtcacagtctctacaagaacacaatcataaatgtaaaaatatactgacttaaagttcaacatataata |
435 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45974510 |
tttcccatcttcattcgaagttctaataggttgtcacagtctctacaagaacacaatcataaatgtaaaaatatactgacttaaagttcaacatataata |
45974609 |
T |
|
| Q |
436 |
ttaggtaataatttgttgataattttaatcagaaaataaaatttctattccttcctaacttaatnnnnnnnntaatgccgatctccataaaaaagttggc |
535 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
45974610 |
ttaggtaataatttgttgataattttaatcagaaaataaaatttctattccttcctaacttaataaaaaaaataatgccgatctccataaaaaagttggc |
45974709 |
T |
|
| Q |
536 |
atcatttggttcat |
549 |
Q |
| |
|
|||||||||||||| |
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|
| T |
45974710 |
atcatttggttcat |
45974723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 148 - 471
Target Start/End: Complemental strand, 45857524 - 45857200
Alignment:
| Q |
148 |
ggcctgcaaccagaaatgttcaacacagaactaagaagttcaacctgtgaaaattaattcatgtttcagaacaatgaatgatattttggttacctttgga |
247 |
Q |
| |
|
|||||||| |||||||||||||| |||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
45857524 |
ggcctgcatccagaaatgttcaaatcagaactatagagttcagcctgtgaaaattaattcatgttgcagaacaatgaatgatattttggttacctttggc |
45857425 |
T |
|
| Q |
248 |
agcatatatagcagaaatgtccattttattgttgtcaatcctttttgctttcacttttcctgtctcttcaatcatgttggtatcaacctttcccatcttc |
347 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||| |
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| T |
45857424 |
agcatatatagcagaaatgtccattttattgttgtcaatcctttttgctttcacttttcctgtctcttcaatcatgttggtgttaagctttcccatcttc |
45857325 |
T |
|
| Q |
348 |
attcgaagttct-aatcggttgtcacagtctctacaagaacacaatcataaatgtaaaaatatactgacttaaagttcaacatataatattaggtaataa |
446 |
Q |
| |
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|||||||||||| | | ||| ||| |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |
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|
| T |
45857324 |
attcgaagttctgaggcagttatcatgatctctacaggaacacaatcataaatgtaaaaatctactgacttaaagttcaacatataatattagctaataa |
45857225 |
T |
|
| Q |
447 |
tttgttgataattttaatcagaaaa |
471 |
Q |
| |
|
|||||| ||||||| |||||||||| |
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|
| T |
45857224 |
tttgttaataatttcaatcagaaaa |
45857200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 148 - 471
Target Start/End: Complemental strand, 45870077 - 45869754
Alignment:
| Q |
148 |
ggcctgcaaccagaaatgttcaacacagaactaagaagttcaacctgtgaaaattaattcatgtttcagaacaatgaatgatattttggttacctttgga |
247 |
Q |
| |
|
|||||||| ||||||| |||||| |||||||| | |||||| |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |
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|
| T |
45870077 |
ggcctgcatccagaaaagttcaaatcagaactatggagttcagcctgtgaaaattaattcatgttgcagaagaatgaatgatattttggttacctttgga |
45869978 |
T |
|
| Q |
248 |
agcatatatagcagaaatgtccattttattgttgtcaatcctttttgctttcacttttcctgtctcttcaatcatgttggtatcaacctttcccatcttc |
347 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||| |
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|
| T |
45869977 |
agcatatatagcagaaatgtccattttattgttgtcaatcctttttgctttcacttttcctgtctcttcaatcatgttggtgttaagctttcccatcttc |
45869878 |
T |
|
| Q |
348 |
attcgaagttct-aatcggttgtcacagtctctacaagaacacaatcataaatgtaaaaatatactgacttaaagttcaacatataatattaggtaataa |
446 |
Q |
| |
|
|||||||||||| | |||| |||| |||||| | |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||||| |
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|
| T |
45869877 |
attcgaagttctgaggcggtagtcatgatctcta-aggaacacaatcataattgtaaaaatctactgacttaaagttcaacatataatattagctaataa |
45869779 |
T |
|
| Q |
447 |
tttgttgataattttaatcagaaaa |
471 |
Q |
| |
|
|||||| ||||||| |||||||||| |
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|
| T |
45869778 |
tttgttaataatttcaatcagaaaa |
45869754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 141 - 324
Target Start/End: Original strand, 45964906 - 45965089
Alignment:
| Q |
141 |
ttagagcggcctgcaaccagaaatgttcaacacagaactaagaagttcaacctgtgaaaattaattcatgtttcagaacaatgaatgatattttggttac |
240 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45964906 |
ttagagtggcctgcaaccagaaatgttcaacacagaactaagaagttcaacctgtgaaaattaattcatgtttcagaacaatgaatgatattttggttac |
45965005 |
T |
|
| Q |
241 |
ctttggaagcatatatagcagaaatgtccattttattgttgtcaatcctttttgctttcacttttcctgtctcttcaatcatgt |
324 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |
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| T |
45965006 |
ctttggaagcatatatagcagaaatgtccattttattgttgtcattcctttttgctttcatttttcctgtctcttcaatcatgt |
45965089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 141 - 471
Target Start/End: Original strand, 45980762 - 45981083
Alignment:
| Q |
141 |
ttagagcggcctgcaaccagaaatgttcaacacagaactaagaagttcaacctgtgaaaattaattcatgtttcagaacaatgaatgatattttggttac |
240 |
Q |
| |
|
|||||| ||||||||| ||||||||||||| |||||||| || ||||||||||||||||||||| |||||||||||| ||||||||||||| |
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|
| T |
45980762 |
ttagagaggcctgcaagcagaaatgttcaattcagaactatga-------cctgtgaaaattaattcatgt---agaacaatgaataatattttggttac |
45980851 |
T |
|
| Q |
241 |
ctttggaagcatatatagcagaaatgtccattttattgttgtcaatcctttttgctttcacttttcctgtctcttcaatcatgttggtatcaacctttcc |
340 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |||||||| ||||||| | |||||| |
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|
| T |
45980852 |
ctttagaagcatatatagcagaaatgtccattttattgttgtcaatcctttttgctttcatttttccggtcccttcaatcttgttggtggttagctttcc |
45980951 |
T |
|
| Q |
341 |
catcttcattcgaagttct-aatcggttgtcacagtctctacaagaacacaatcataaatgtaaaaatatactgacttaaagttcaacatataatattag |
439 |
Q |
| |
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||||| | | |||||||| | ||||||||| | ||||| || |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
45980952 |
tatcttgagttgaagttctgaggcggttgtcataatctctgcaggaacacaaccataaatgtaaaaatctactgacttaaagttcaacatataatattag |
45981051 |
T |
|
| Q |
440 |
gtaataatttgttgataattttaatcagaaaa |
471 |
Q |
| |
|
||||| |||||| ||||||| |||||||||| |
|
|
| T |
45981052 |
ctaatagtttgttaataatttcaatcagaaaa |
45981083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 45974244 - 45974099
Alignment:
| Q |
1 |
ataacacatgttaaggaattgttgtttacagctttagttttctgtttaatgaattgattcttaattttactggttttcatgtgagccttgcagcagggat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45974244 |
ataacacatgttaaggaattgttgtttacagctttagttttctgtttaatgaattaattcttaattttactggttttcatgtgagccttgcagcagggat |
45974145 |
T |
|
| Q |
101 |
atagtaagtaaacattcatttcaatacttggttgttgcctttagag |
146 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45974144 |
atagtaagtaaacattcatttcaatacttggttgttgcctttagag |
45974099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 329 - 474
Target Start/End: Original strand, 45969985 - 45970131
Alignment:
| Q |
329 |
atcaacctttcccatcttcattcgaagttctaatcgg-ttgtcacagtctctacaagaacacaatcataaatgtaaaaatatactgacttaaagttcaac |
427 |
Q |
| |
|
|||||||||||||||||||||||||||||| | || |||||| | |||||||| |||||||||||||||||||||||| ||||||||||||||| ||| |
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|
| T |
45969985 |
atcaacctttcccatcttcattcgaagttccgagggggttgtcataatctctacaggaacacaatcataaatgtaaaaatctactgacttaaagtttaac |
45970084 |
T |
|
| Q |
428 |
atataatattaggtaataatttgttgataattttaatcagaaaataa |
474 |
Q |
| |
|
|||||| |||| ||||||||| ||| |||||||||||||||||||| |
|
|
| T |
45970085 |
atataacgttagctaataattttttgttaattttaatcagaaaataa |
45970131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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