View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21530_high_9 (Length: 264)

Name: NF21530_high_9
Description: NF21530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21530_high_9
NF21530_high_9
[»] chr5 (1 HSPs)
chr5 (95-245)||(3465422-3465573)
[»] chr8 (3 HSPs)
chr8 (95-245)||(4040439-4040595)
chr8 (98-245)||(42241350-42241503)
chr8 (126-200)||(36650580-36650655)
[»] chr4 (2 HSPs)
chr4 (124-195)||(50655223-50655294)
chr4 (126-183)||(48309773-48309830)
[»] chr7 (3 HSPs)
chr7 (124-201)||(46028588-46028666)
chr7 (126-183)||(26557974-26558031)
chr7 (124-198)||(40188335-40188409)
[»] chr6 (1 HSPs)
chr6 (95-183)||(12834030-12834118)
[»] chr3 (1 HSPs)
chr3 (124-183)||(1762140-1762199)
[»] chr2 (1 HSPs)
chr2 (126-200)||(29682571-29682645)
[»] chr1 (1 HSPs)
chr1 (124-183)||(52372547-52372606)


Alignment Details
Target: chr5 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 95 - 245
Target Start/End: Original strand, 3465422 - 3465573
Alignment:
Q  95 agaaaaaataaggtcgtttctgaatatctagatggtccaaataacaacatgccaaacaatgagtaaacctaccctaacactcttcccccacctaatcccg 194  Q
    |||||||||||||||||||||| || ||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  3465422 agaaaaaataaggtcgtttctggatgtctagatggtccaaataacaacatgtcaaacgatgagtaaacctagcctaacactcttcccccacctaatcccg 3465521  T
Q  195 tgaaggac-ctgctggactagacccataggagacacaaactcccaccccaac 245  Q
    |||||||| |||| ||||||||||||||||||||||||||||||||||||||    
T  3465522 tgaaggacactgccggactagacccataggagacacaaactcccaccccaac 3465573  T

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Target: chr8 (Bit Score: 89; Significance: 6e-43; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 95 - 245
Target Start/End: Original strand, 4040439 - 4040595
Alignment:
Q  95 agaaaaaataaggtcgtttctgaatatctagatggtccaaataacaacatgccaaacaatgagtaaacctaccctaacactctt-cccccacctaatccc 193  Q
    |||||||||||||||||||||| || || |||||||||| ||||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||    
T  4040439 agaaaaaataaggtcgtttctggatgtccagatggtccagataacaacatgccaaacaatgagcaaacctagcctaacactcttccccccacctaatccc 4040538  T
Q  194 gtgaaggac-----ctgctggactagacccataggagacacaaactcccaccccaac 245  Q
    |||||| ||     ||| ||| |||||||||||||||||||||||||||||| ||||    
T  4040539 gtgaagaacagaaactgttgggctagacccataggagacacaaactcccaccacaac 4040595  T

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Target: chr8; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 98 - 245
Target Start/End: Original strand, 42241350 - 42241503
Alignment:
Q  98 aaaaataaggtcgtttctgaatatctagatggtccaaataacaacatgccaaacaatgagtaaacctaccctaacactctt-cccccacctaatcccgtg 196  Q
    ||||||||||||||||||| || || ||||||| ||||||||| |||| ||||||||||| |||||||  ||||| ||||| ||||||||||||||||||    
T  42241350 aaaaataaggtcgtttctggatgtccagatggttcaaataacagcatgtcaaacaatgagcaaacctagtctaacgctcttccccccacctaatcccgtg 42241449  T
Q  197 aaggac-----ctgctggactagacccataggagacacaaactcccaccccaac 245  Q
    ||||||     ||||||| |||||||||||||||||||||||||||||||||||    
T  42241450 aaggacggaaactgctgggctagacccataggagacacaaactcccaccccaac 42241503  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 126 - 200
Target Start/End: Original strand, 36650580 - 36650655
Alignment:
Q  126 atggtccaaataacaacatgccaaacaatgagtaaacctaccctaacact-cttcccccacctaatcccgtgaagg 200  Q
    ||||||||||||||| |||||||||||| ||| ||||||| |||||| || || ||||| ||||| ||||||||||    
T  36650580 atggtccaaataacagcatgccaaacaaggagcaaacctaacctaactctcctaccccctcctaagcccgtgaagg 36650655  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 124 - 195
Target Start/End: Original strand, 50655223 - 50655294
Alignment:
Q  124 agatggtccaaataacaacatgccaaacaatgagtaaacctaccctaacactcttcccccacctaatcccgt 195  Q
    ||||||||||||||||| |||||||||| | ||| ||||||| |||||| |||||||||| ||||| |||||    
T  50655223 agatggtccaaataacagcatgccaaaccaggagcaaacctaacctaactctcttccccctcctaagcccgt 50655294  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 126 - 183
Target Start/End: Original strand, 48309773 - 48309830
Alignment:
Q  126 atggtccaaataacaacatgccaaacaatgagtaaacctaccctaacactcttccccc 183  Q
    |||||||||||||||| |||||||||||  || ||||||| |||||| ||||||||||    
T  48309773 atggtccaaataacaatatgccaaacaagaagcaaacctaacctaactctcttccccc 48309830  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 124 - 201
Target Start/End: Original strand, 46028588 - 46028666
Alignment:
Q  124 agatggtccaaataacaacatgccaaacaatgagtaaacctaccctaacactcttccccc-acctaatcccgtgaagga 201  Q
    ||||||||||||||||| ||||||||||| | ||||||||||  ||||||| |||||||| |||||| ||||| |||||    
T  46028588 agatggtccaaataacagcatgccaaacagtaagtaaacctattctaacacgcttccccctacctaaccccgtaaagga 46028666  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 126 - 183
Target Start/End: Original strand, 26557974 - 26558031
Alignment:
Q  126 atggtccaaataacaacatgccaaacaatgagtaaacctaccctaacactcttccccc 183  Q
    ||||||||||||||||||||||||||||  || ||||||| |||||| ||| ||||||    
T  26557974 atggtccaaataacaacatgccaaacaagaagcaaacctaacctaactctcctccccc 26558031  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 198
Target Start/End: Original strand, 40188335 - 40188409
Alignment:
Q  124 agatggtccaaataacaacatgccaaacaatgagtaaacctaccctaacactcttcccccacctaatcccgtgaa 198  Q
    |||||||||||| |||| |||| |||||||  || || |||| |||||| |||||||||| ||||| ||||||||    
T  40188335 agatggtccaaacaacaccatgtcaaacaagaagcaatcctaacctaactctcttccccctcctaaccccgtgaa 40188409  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 95 - 183
Target Start/End: Original strand, 12834030 - 12834118
Alignment:
Q  95 agaaaaaataaggtcgtttctgaatatctagatggtccaaataacaacatgccaaacaatgagtaaacctaccctaacactcttccccc 183  Q
    |||||||||||| || || | ||| ||| ||||||||||||||||| ||||||||||||| | ||||||||  |||||||  |||||||    
T  12834030 agaaaaaataagatcattccggaacatccagatggtccaaataacagcatgccaaacaataaataaacctattctaacacgattccccc 12834118  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 124 - 183
Target Start/End: Original strand, 1762140 - 1762199
Alignment:
Q  124 agatggtccaaataacaacatgccaaacaatgagtaaacctaccctaacactcttccccc 183  Q
    ||||||||||||||||||||||||||||||  ||||||| ||  ||||||| ||||||||    
T  1762140 agatggtccaaataacaacatgccaaacaagaagtaaacatattctaacacgcttccccc 1762199  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 126 - 200
Target Start/End: Complemental strand, 29682645 - 29682571
Alignment:
Q  126 atggtccaaataacaacatgccaaacaatgagtaaacctaccctaacactcttcccccacctaatcccgtgaagg 200  Q
    ||||||||||||||||||||||||||||  || ||||||| |||||| ||| |||||| || || ||||| ||||    
T  29682645 atggtccaaataacaacatgccaaacaagaagcaaacctaacctaactctcctccccctcccaaccccgtaaagg 29682571  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 124 - 183
Target Start/End: Complemental strand, 52372606 - 52372547
Alignment:
Q  124 agatggtccaaataacaacatgccaaacaatgagtaaacctaccctaacactcttccccc 183  Q
    ||||||||||||||| | ||||||||||||| ||||||| ||  ||||||| ||||||||    
T  52372606 agatggtccaaataatagcatgccaaacaataagtaaacatattctaacacgcttccccc 52372547  T

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