View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21530_low_12 (Length: 238)

Name: NF21530_low_12
Description: NF21530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21530_low_12
NF21530_low_12
[»] chr1 (8 HSPs)
chr1 (1-223)||(10605085-10605314)
chr1 (15-63)||(30762018-30762066)
chr1 (15-60)||(10785093-10785138)
chr1 (7-63)||(4431071-4431127)
chr1 (1-60)||(27905821-27905880)
chr1 (13-60)||(34159045-34159092)
chr1 (1-63)||(49820546-49820608)
chr1 (22-63)||(32882774-32882815)
[»] chr4 (5 HSPs)
chr4 (1-60)||(42719546-42719605)
chr4 (1-62)||(19814847-19814908)
chr4 (14-67)||(21983500-21983552)
chr4 (6-63)||(52009220-52009277)
chr4 (3-67)||(28967267-28967330)
[»] chr3 (3 HSPs)
chr3 (150-221)||(32604646-32604717)
chr3 (12-60)||(46358014-46358062)
chr3 (16-60)||(32010192-32010236)
[»] chr6 (2 HSPs)
chr6 (6-60)||(3880244-3880298)
chr6 (15-63)||(4043346-4043394)
[»] chr7 (3 HSPs)
chr7 (2-67)||(3478739-3478804)
chr7 (1-59)||(33719355-33719413)
chr7 (3-67)||(47456699-47456762)
[»] chr8 (5 HSPs)
chr8 (20-63)||(2613176-2613219)
chr8 (1-59)||(12197708-12197766)
chr8 (1-59)||(12442136-12442194)
chr8 (3-67)||(8843739-8843802)
chr8 (7-63)||(17656365-17656421)
[»] chr5 (2 HSPs)
chr5 (1-63)||(8297860-8297922)
chr5 (7-67)||(25992397-25992457)
[»] chr2 (3 HSPs)
chr2 (3-67)||(15361116-15361179)
chr2 (6-60)||(4975140-4975194)
chr2 (6-60)||(4993048-4993102)
[»] scaffold0002 (1 HSPs)
scaffold0002 (23-63)||(426557-426597)


Alignment Details
Target: chr1 (Bit Score: 162; Significance: 1e-86; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 10605085 - 10605314
Alignment:
Q  1 tctctgtttcactggtctctattcgtcttgagcatggatctgattgttaaataaaatttgctgattcnnnnnnnnnn-------tgatgaggtagataag 93  Q
    ||||||||||||  |||||||||||||||||||| ||||||||||||||||||||||||||||||||                 ||||||||||||||||    
T  10605085 tctctgtttcaccagtctctattcgtcttgagcagggatctgattgttaaataaaatttgctgattcaaaaaaaaaaagtatagtgatgaggtagataag 10605184  T
Q  94 aataataaggacctttcaaggacaagggcaaaaggggccatgaagatagtagcaataacatgacggtacacagagagtacccaatgactcatgccatgct 193  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10605185 aataataaggacctttcaaggacaagggcaaaaggggccatgaagatagtagcaataacatgacggtacacagagagtacccaatgactcatgccatgct 10605284  T
Q  194 tgaatgaaaccatagtgatgatgtacattc 223  Q
    ||||||||||||||||||||||||||||||    
T  10605285 tgaatgaaaccatagtgatgatgtacattc 10605314  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 15 - 63
Target Start/End: Complemental strand, 30762066 - 30762018
Alignment:
Q  15 gtctctattcgtcttgagcatggatctgattgttaaataaaatttgctg 63  Q
    |||||| ||||||||||||| |||||||||| |||||||||||||||||    
T  30762066 gtctctgttcgtcttgagcaaggatctgatttttaaataaaatttgctg 30762018  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 60
Target Start/End: Complemental strand, 10785138 - 10785093
Alignment:
Q  15 gtctctattcgtcttgagcatggatctgattgttaaataaaatttg 60  Q
    |||||||||||||||||||| ||||||| ||||||||| |||||||    
T  10785138 gtctctattcgtcttgagcagggatctggttgttaaatgaaatttg 10785093  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 63
Target Start/End: Original strand, 4431071 - 4431127
Alignment:
Q  7 tttcactggtctctattcgtcttgagcatggatctgattgttaaataaaatttgctg 63  Q
    |||||| |||||||||||||||||||||  ||| || ||||| ||||||||||||||    
T  4431071 tttcaccggtctctattcgtcttgagcagagatatgtttgtttaataaaatttgctg 4431127  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 27905821 - 27905880
Alignment:
Q  1 tctctgtttcactggtctctattcgtcttgagcatggatctgattgttaaataaaatttg 60  Q
    |||||| ||||| ||||||||||| ||||||||| ||||||| ||||| |||||| ||||    
T  27905821 tctctgattcaccggtctctattcttcttgagcagggatctggttgtttaataaattttg 27905880  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 60
Target Start/End: Original strand, 34159045 - 34159092
Alignment:
Q  13 tggtctctattcgtcttgagcatggatctgattgttaaataaaatttg 60  Q
    ||||||||||| |||||||||| ||||||||||||| |||||| ||||    
T  34159045 tggtctctatttgtcttgagcagggatctgattgtttaataaattttg 34159092  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 49820546 - 49820608
Alignment:
Q  1 tctctgtttcactggtctctattcgtcttgagcatggatctgattgttaaataaaatttgctg 63  Q
    |||||| ||||| | |||||||  ||||||||||  |||| ||||||||||||||||||||||    
T  49820546 tctctgattcaccgatctctatctgtcttgagcagagatcagattgttaaataaaatttgctg 49820608  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 63
Target Start/End: Original strand, 32882774 - 32882815
Alignment:
Q  22 ttcgtcttgagcatggatctgattgttaaataaaatttgctg 63  Q
    ||||||||||||| |||| |||||||| ||||||||||||||    
T  32882774 ttcgtcttgagcagggatgtgattgtttaataaaatttgctg 32882815  T

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Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 42719546 - 42719605
Alignment:
Q  1 tctctgtttcactggtctctattcgtcttgagcatggatctgattgttaaataaaatttg 60  Q
    |||| ||||||| ||||||||||||||||||||| |||| |||||||| |||||||||||    
T  42719546 tctcagtttcaccggtctctattcgtcttgagcagggatttgattgtttaataaaatttg 42719605  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 19814908 - 19814847
Alignment:
Q  1 tctctgtttcactggtctctattcgtcttgagcatggatctgattgttaaataaaatttgct 62  Q
    ||||||||| |  ||||||| ||||||||||||| ||||||| |||||||||||||||||||    
T  19814908 tctctgttttatcggtctctgttcgtcttgagcagggatctggttgttaaataaaatttgct 19814847  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 67
Target Start/End: Complemental strand, 21983552 - 21983500
Alignment:
Q  14 ggtctctattcgtcttgagcatggatctgattgttaaataaaatttgctgattc 67  Q
    ||||||| ||||||||||||| |||||||||| || ||||||||||||||||||    
T  21983552 ggtctctgttcgtcttgagcagggatctgatt-tttaataaaatttgctgattc 21983500  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 63
Target Start/End: Original strand, 52009220 - 52009277
Alignment:
Q  6 gtttcactggtctctattcgtcttgagcatggatctgattgttaaataaaatttgctg 63  Q
    ||||||| | ||||||||||||||| ||| ||||||| | ||| ||||||||||||||    
T  52009220 gtttcaccgatctctattcgtcttgggcagggatctggtagtttaataaaatttgctg 52009277  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 67
Target Start/End: Original strand, 28967267 - 28967330
Alignment:
Q  3 tctgtttcactggtctctattcgtcttgagcatggatctgattgttaaataaaatttgctgattc 67  Q
    |||||||||| | ||||| |||||||||||||   ||||| || |||||||||||||||||||||    
T  28967267 tctgtttcaccgatctctgttcgtcttgagcagaaatctggtt-ttaaataaaatttgctgattc 28967330  T

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Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 150 - 221
Target Start/End: Original strand, 32604646 - 32604717
Alignment:
Q  150 aacatgacggtacacagagagtacccaatgactcatgccatgcttgaatgaaaccatagtgatgatgtacat 221  Q
    ||||||||||||||| ||||| | |||||| ||||| ||||| ||||| ||||||||||| |||||||||||    
T  32604646 aacatgacggtacacggagagaatccaatggctcataccatgtttgaaagaaaccatagtaatgatgtacat 32604717  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 12 - 60
Target Start/End: Complemental strand, 46358062 - 46358014
Alignment:
Q  12 ctggtctctattcgtcttgagcatggatctgattgttaaataaaatttg 60  Q
    ||||||||| ||||||||||||| ||||||| |||||||||||||||||    
T  46358062 ctggtctctgttcgtcttgagcagggatctggttgttaaataaaatttg 46358014  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 32010192 - 32010236
Alignment:
Q  16 tctctattcgtcttgagcatggatctgattgttaaataaaatttg 60  Q
    ||||| ||||||||||| | ||||||| |||||||||||||||||    
T  32010192 tctctgttcgtcttgagtagggatctggttgttaaataaaatttg 32010236  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 6 - 60
Target Start/End: Complemental strand, 3880298 - 3880244
Alignment:
Q  6 gtttcactggtctctattcgtcttgagcatggatctgattgttaaataaaatttg 60  Q
    ||||||| ||||||| ||||||||||||| ||||||||||||| |||||||||||    
T  3880298 gtttcaccggtctctgttcgtcttgagcagggatctgattgtttaataaaatttg 3880244  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 63
Target Start/End: Complemental strand, 4043394 - 4043346
Alignment:
Q  15 gtctctattcgtcttgagcatggatctgattgttaaataaaatttgctg 63  Q
    |||| |||||||||||||||  ||| ||||| |||||||||||||||||    
T  4043394 gtctttattcgtcttgagcagagatttgatttttaaataaaatttgctg 4043346  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 2 - 67
Target Start/End: Original strand, 3478739 - 3478804
Alignment:
Q  2 ctctgtttcactggtctctattcgtcttgagcatggatctgattgttaaataaaatttgctgattc 67  Q
    |||| |||||| ||||||| || ||||||| || ||||||| ||||||||||||||||||||||||    
T  3478739 ctctctttcaccggtctctgtttgtcttgatcagggatctggttgttaaataaaatttgctgattc 3478804  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 33719355 - 33719413
Alignment:
Q  1 tctctgtttcactggtctctattcgtcttgagcatggatctgattgttaaataaaattt 59  Q
    |||| ||||||| | ||||| ||||||||||||| ||||||| ||||| ||||||||||    
T  33719355 tctcagtttcaccgatctctgttcgtcttgagcagggatctggttgtttaataaaattt 33719413  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 67
Target Start/End: Complemental strand, 47456762 - 47456699
Alignment:
Q  3 tctgtttcactggtctctattcgtcttgagcatggatctgattgttaaataaaatttgctgattc 67  Q
    |||||||||| ||||||| |||||||||||||  |||||| || || ||||||||||| ||||||    
T  47456762 tctgtttcaccggtctctgttcgtcttgagcagagatctggtt-tttaataaaatttgttgattc 47456699  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 63
Target Start/End: Complemental strand, 2613219 - 2613176
Alignment:
Q  20 tattcgtcttgagcatggatctgattgttaaataaaatttgctg 63  Q
    ||||||||||||| | ||||||||||||||||||||||||||||    
T  2613219 tattcgtcttgagtagggatctgattgttaaataaaatttgctg 2613176  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 12197766 - 12197708
Alignment:
Q  1 tctctgtttcactggtctctattcgtcttgagcatggatctgattgttaaataaaattt 59  Q
    |||||| ||||| | |||||||||||||||||||| |||||  ||||||||||||||||    
T  12197766 tctctgattcaccgatctctattcgtcttgagcatagatctcgttgttaaataaaattt 12197708  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 12442194 - 12442136
Alignment:
Q  1 tctctgtttcactggtctctattcgtcttgagcatggatctgattgttaaataaaattt 59  Q
    |||||| ||||| | |||||||||||||||||||| |||||  ||||||||||||||||    
T  12442194 tctctgattcaccgatctctattcgtcttgagcatagatctcgttgttaaataaaattt 12442136  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 67
Target Start/End: Complemental strand, 8843802 - 8843739
Alignment:
Q  3 tctgtttcactggtctctattcgtcttgagcatggatctgattgttaaataaaatttgctgattc 67  Q
    |||||||||| ||||||| ||||||||||| | |||| ||||| || ||||||||||||||||||    
T  8843802 tctgtttcaccggtctctgttcgtcttgagaagggatttgatt-tttaataaaatttgctgattc 8843739  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 63
Target Start/End: Complemental strand, 17656421 - 17656365
Alignment:
Q  7 tttcactggtctctattcgtcttgagcatggatctgattgttaaataaaatttgctg 63  Q
    |||||| ||||||||||  || |||||| ||| ||||||||| ||||||||||||||    
T  17656421 tttcaccggtctctattgctcatgagcagggacctgattgtttaataaaatttgctg 17656365  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 8297860 - 8297922
Alignment:
Q  1 tctctgtttcactggtctctattcgtcttgagcatggatctgattgttaaataaaatttgctg 63  Q
    |||| ||||||| ||||||| ||||||||||| |  |||||||||||| ||||||||||||||    
T  8297860 tctcagtttcaccggtctctgttcgtcttgagtagagatctgattgttcaataaaatttgctg 8297922  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 67
Target Start/End: Original strand, 25992397 - 25992457
Alignment:
Q  7 tttcactggtctctattcgtcttgagcatggatctgattgttaaataaaatttgctgattc 67  Q
    |||||| ||||||| |||||||||||||  |||||| ||||| ||||| ||||||||||||    
T  25992397 tttcaccggtctctgttcgtcttgagcagagatctggttgtttaataatatttgctgattc 25992457  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 67
Target Start/End: Original strand, 15361116 - 15361179
Alignment:
Q  3 tctgtttcactggtctctattcgtcttgagcatggatctgattgttaaataaaatttgctgattc 67  Q
    ||||||||||  |||||||||||||||||||| |||| ||||| || ||||||||||| ||||||    
T  15361116 tctgtttcaccagtctctattcgtcttgagcagggatttgatt-tttaataaaatttgttgattc 15361179  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 60
Target Start/End: Original strand, 4975140 - 4975194
Alignment:
Q  6 gtttcactggtctctattcgtcttgagcatggatctgattgttaaataaaatttg 60  Q
    |||||||| |||||| |||||||||||||  || ||||| |||||||||||||||    
T  4975140 gtttcactagtctctgttcgtcttgagcagagacctgatggttaaataaaatttg 4975194  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 60
Target Start/End: Original strand, 4993048 - 4993102
Alignment:
Q  6 gtttcactggtctctattcgtcttgagcatggatctgattgttaaataaaatttg 60  Q
    |||||||| |||||| |||||||||||||  || ||||| |||||||||||||||    
T  4993048 gtttcactagtctctgttcgtcttgagcagagacctgatggttaaataaaatttg 4993102  T

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Target: scaffold0002 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 63
Target Start/End: Complemental strand, 426597 - 426557
Alignment:
Q  23 tcgtcttgagcatggatctgattgttaaataaaatttgctg 63  Q
    |||||||||| | |||||||||| |||||||||||||||||    
T  426597 tcgtcttgagtagggatctgatttttaaataaaatttgctg 426557  T

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