View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21530_low_3 (Length: 510)
Name: NF21530_low_3
Description: NF21530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21530_low_3 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 436; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 1 - 499
Target Start/End: Original strand, 45974220 - 45974723
Alignment:
| Q |
1 |
acaacaattccttaacatgtgttattgttttctttatgactttccctttacatattcacctttagggaagaaatctcttcaaattttgtattagagaggc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |
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| T |
45974220 |
acaacaattccttaacatgtgttattgttttctttatgactttccctttacatattcacctttggtgaagaaatctcttcaaattttgtattagagaggc |
45974319 |
T |
|
| Q |
101 |
ctgcaaccagaaatgttcaacacagaactaagaagttcaacctgtgaaaattaattcatgtttcagaacaatgaatgatattttggttacctttggaagc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
45974320 |
ctgcaaccagaaatgttcaacacagaactaagaagttcaacctgtgaaaattaattcatgtttcagaacaatgaatgatattttggttacctttggcagc |
45974419 |
T |
|
| Q |
201 |
atatatagcagaaatgtccattttattgttgtcaatcctttttgctttcacttttcctgtctcttcaa-----tcatgttggtatcaacctttcccatct |
295 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
45974420 |
atatatagcagaaatgtccattttattgttgtcattcctttttgctttcatttttcctgtctcttcaatcatgtcatgttggtatcaacctttcccatct |
45974519 |
T |
|
| Q |
296 |
tcattcgaagttctaatcggttgtcacagtctctacaagaacacaatcataaatgtaaaaatatactgacttaaagttcaacatataatattaggtaata |
395 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45974520 |
tcattcgaagttctaataggttgtcacagtctctacaagaacacaatcataaatgtaaaaatatactgacttaaagttcaacatataatattaggtaata |
45974619 |
T |
|
| Q |
396 |
atttgttgataattttaatcagaaaataaaatttctattccttcctaacttaatnnnnnnnntaatgccgatctccataaaaaagttggcatcatttggt |
495 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
45974620 |
atttgttgataattttaatcagaaaataaaatttctattccttcctaacttaataaaaaaaataatgccgatctccataaaaaagttggcatcatttggt |
45974719 |
T |
|
| Q |
496 |
tcat |
499 |
Q |
| |
|
|||| |
|
|
| T |
45974720 |
tcat |
45974723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 76 - 421
Target Start/End: Complemental strand, 45857546 - 45857200
Alignment:
| Q |
76 |
tcttcaaattttgtattagagaggcctgcaaccagaaatgttcaacacagaactaagaagttcaacctgtgaaaattaattcatgtttcagaacaatgaa |
175 |
Q |
| |
|
||||| ||||| |||||||| ||||||||| |||||||||||||| |||||||| |||||| |||||||||||||||||||||| |||||||||||| |
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|
| T |
45857546 |
tcttcgaatttcgtattagataggcctgcatccagaaatgttcaaatcagaactatagagttcagcctgtgaaaattaattcatgttgcagaacaatgaa |
45857447 |
T |
|
| Q |
176 |
tgatattttggttacctttggaagcatatatagcagaaatgtccattttattgttgtcaatcctttttgctttcacttttcctgtctcttcaatcatgtt |
275 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45857446 |
tgatattttggttacctttggcagcatatatagcagaaatgtccattttattgttgtcaatcctttttgctttcacttttcctgtctcttcaatcatgtt |
45857347 |
T |
|
| Q |
276 |
ggtatcaacctttcccatcttcattcgaagttct-aatcggttgtcacagtctctacaagaacacaatcataaatgtaaaaatatactgacttaaagttc |
374 |
Q |
| |
|
||| | || ||||||||||||||||||||||||| | | ||| ||| |||||||| |||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
45857346 |
ggtgttaagctttcccatcttcattcgaagttctgaggcagttatcatgatctctacaggaacacaatcataaatgtaaaaatctactgacttaaagttc |
45857247 |
T |
|
| Q |
375 |
aacatataatattaggtaataatttgttgataattttaatcagaaaa |
421 |
Q |
| |
|
||||||||||||||| |||||||||||| ||||||| |||||||||| |
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|
| T |
45857246 |
aacatataatattagctaataatttgttaataatttcaatcagaaaa |
45857200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 76 - 421
Target Start/End: Complemental strand, 45870099 - 45869754
Alignment:
| Q |
76 |
tcttcaaattttgtattagagaggcctgcaaccagaaatgttcaacacagaactaagaagttcaacctgtgaaaattaattcatgtttcagaacaatgaa |
175 |
Q |
| |
|
||||| ||||| |||||||| ||||||||| ||||||| |||||| |||||||| | |||||| |||||||||||||||||||||| ||||| |||||| |
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|
| T |
45870099 |
tcttcgaatttcgtattagataggcctgcatccagaaaagttcaaatcagaactatggagttcagcctgtgaaaattaattcatgttgcagaagaatgaa |
45870000 |
T |
|
| Q |
176 |
tgatattttggttacctttggaagcatatatagcagaaatgtccattttattgttgtcaatcctttttgctttcacttttcctgtctcttcaatcatgtt |
275 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45869999 |
tgatattttggttacctttggaagcatatatagcagaaatgtccattttattgttgtcaatcctttttgctttcacttttcctgtctcttcaatcatgtt |
45869900 |
T |
|
| Q |
276 |
ggtatcaacctttcccatcttcattcgaagttct-aatcggttgtcacagtctctacaagaacacaatcataaatgtaaaaatatactgacttaaagttc |
374 |
Q |
| |
|
||| | || ||||||||||||||||||||||||| | |||| |||| |||||| | |||||||||||||| ||||||||| |||||||||||||||| |
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|
| T |
45869899 |
ggtgttaagctttcccatcttcattcgaagttctgaggcggtagtcatgatctcta-aggaacacaatcataattgtaaaaatctactgacttaaagttc |
45869801 |
T |
|
| Q |
375 |
aacatataatattaggtaataatttgttgataattttaatcagaaaa |
421 |
Q |
| |
|
||||||||||||||| |||||||||||| ||||||| |||||||||| |
|
|
| T |
45869800 |
aacatataatattagctaataatttgttaataatttcaatcagaaaa |
45869754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 84 - 274
Target Start/End: Original strand, 45964899 - 45965089
Alignment:
| Q |
84 |
ttttgtattagagaggcctgcaaccagaaatgttcaacacagaactaagaagttcaacctgtgaaaattaattcatgtttcagaacaatgaatgatattt |
183 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45964899 |
ttttgtattagagtggcctgcaaccagaaatgttcaacacagaactaagaagttcaacctgtgaaaattaattcatgtttcagaacaatgaatgatattt |
45964998 |
T |
|
| Q |
184 |
tggttacctttggaagcatatatagcagaaatgtccattttattgttgtcaatcctttttgctttcacttttcctgtctcttcaatcatgt |
274 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
45964999 |
tggttacctttggaagcatatatagcagaaatgtccattttattgttgtcattcctttttgctttcatttttcctgtctcttcaatcatgt |
45965089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 76 - 421
Target Start/End: Original strand, 45980747 - 45981083
Alignment:
| Q |
76 |
tcttcaaattttgtattagagaggcctgcaaccagaaatgttcaacacagaactaagaagttcaacctgtgaaaattaattcatgtttcagaacaatgaa |
175 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||| |||||||| || ||||||||||||||||||||| ||||||||||| |
|
|
| T |
45980747 |
tcttcaaattttgtattagagaggcctgcaagcagaaatgttcaattcagaactatga-------cctgtgaaaattaattcatgt---agaacaatgaa |
45980836 |
T |
|
| Q |
176 |
tgatattttggttacctttggaagcatatatagcagaaatgtccattttattgttgtcaatcctttttgctttcacttttcctgtctcttcaatcatgtt |
275 |
Q |
| |
|
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |||||||| |||| |
|
|
| T |
45980837 |
taatattttggttacctttagaagcatatatagcagaaatgtccattttattgttgtcaatcctttttgctttcatttttccggtcccttcaatcttgtt |
45980936 |
T |
|
| Q |
276 |
ggtatcaacctttcccatcttcattcgaagttct-aatcggttgtcacagtctctacaagaacacaatcataaatgtaaaaatatactgacttaaagttc |
374 |
Q |
| |
|
||| | |||||| ||||| | | |||||||| | ||||||||| | ||||| || |||||||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
45980937 |
ggtggttagctttcctatcttgagttgaagttctgaggcggttgtcataatctctgcaggaacacaaccataaatgtaaaaatctactgacttaaagttc |
45981036 |
T |
|
| Q |
375 |
aacatataatattaggtaataatttgttgataattttaatcagaaaa |
421 |
Q |
| |
|
||||||||||||||| ||||| |||||| ||||||| |||||||||| |
|
|
| T |
45981037 |
aacatataatattagctaatagtttgttaataatttcaatcagaaaa |
45981083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 279 - 424
Target Start/End: Original strand, 45969985 - 45970131
Alignment:
| Q |
279 |
atcaacctttcccatcttcattcgaagttctaatcgg-ttgtcacagtctctacaagaacacaatcataaatgtaaaaatatactgacttaaagttcaac |
377 |
Q |
| |
|
|||||||||||||||||||||||||||||| | || |||||| | |||||||| |||||||||||||||||||||||| ||||||||||||||| ||| |
|
|
| T |
45969985 |
atcaacctttcccatcttcattcgaagttccgagggggttgtcataatctctacaggaacacaatcataaatgtaaaaatctactgacttaaagtttaac |
45970084 |
T |
|
| Q |
378 |
atataatattaggtaataatttgttgataattttaatcagaaaataa |
424 |
Q |
| |
|
|||||| |||| ||||||||| ||| |||||||||||||||||||| |
|
|
| T |
45970085 |
atataacgttagctaataattttttgttaattttaatcagaaaataa |
45970131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 45980341 - 45980424
Alignment:
| Q |
1 |
acaacaattccttaacatgtgttattgttttctttatg-actttccctttacatattcacctttagggaagaaatctcttcaaa |
83 |
Q |
| |
|
||||| ||||||||||||||| || |||||| ||| | ||||||||||||||||||||||||| ||| ||||||||| ||||| |
|
|
| T |
45980341 |
acaactattccttaacatgtgataatgttttttttttttactttccctttacatattcaccttttgggcagaaatctcatcaaa |
45980424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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