View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21530_low_4 (Length: 440)
Name: NF21530_low_4
Description: NF21530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21530_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 102 - 420
Target Start/End: Original strand, 37614639 - 37614959
Alignment:
| Q |
102 |
acaacatttacagtcaaaacatgcaaatatttgatcacaagctaccnnnnnnnta-ttcatcaaatttgtatctcatgtgtttgttgaaatgcttgagaa |
200 |
Q |
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| T |
37614639 |
acaacatttacagtcaaaacatgcaaatatttgatcacaagctaccaacaaaaaaattcatcaaatttgtatctcatgtgtttgttgaaatgcttgagaa |
37614738 |
T |
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| Q |
201 |
gaactcactttgtgttttgagtaggaggcttacaactgtaggaggctcaccaaattaagttttctctcggcctcacaaattggttacttatcaa-atgtg |
299 |
Q |
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| T |
37614739 |
gaactcactttgtgttttgagtaggaggcttacgactgtaggaggctcaccaaattaagttttctctcggcctcacaaattggttacttatcaatatgtg |
37614838 |
T |
|
| Q |
300 |
gttgatttggcccacctataatcgaattaagccaacacctgcaaatatctttgtttgtagatggatgacattaaaactgtggatctcacactatcattga |
399 |
Q |
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| T |
37614839 |
gttgatttggcccacctataatcgaattaagccaacacctgcaaatatctttgtttgtagatggatgacattaaaactgtggatctcatactatcattga |
37614938 |
T |
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| Q |
400 |
catcaaaccttgcatgtatta |
420 |
Q |
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| T |
37614939 |
catcaaaccttgcatatatta |
37614959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 11 - 107
Target Start/End: Original strand, 37614405 - 37614501
Alignment:
| Q |
11 |
gaggagcagagatccaatccttgagtctatcggagctgatcatggtctgtctatctagcatgcgactatctgggttgttagccatatttacacaaca |
107 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37614405 |
gaggaacagagatccaatccttgagtctatcggagctgatcatggtctgtctatctagcatgcgactatctgggttgttagccatatttacacaaca |
37614501 |
T |
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