View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21530_low_5 (Length: 401)
Name: NF21530_low_5
Description: NF21530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21530_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 18 - 393
Target Start/End: Original strand, 31549874 - 31550250
Alignment:
| Q |
18 |
atttcattgagcgaggatatctgcagaaatccatcaatgaagacaataattaatattagtttaattcctgcaatgattggaagaagnnnnnnnnggtgga |
117 |
Q |
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| T |
31549874 |
atttcattgagcgaggatatctgcagaaatccatcaatgaagacaataattaatattagtttaattcctgcaatgattggaagaagaaaaaaaaggtgga |
31549973 |
T |
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| Q |
118 |
aaggagttcattgaactagaattatactgttattttaccttctgatttgcactttgaatctctcgttcagcttttccgaggtcctcggaaagagtagtat |
217 |
Q |
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| T |
31549974 |
aaggagttcattgaactagaattatactgttattttaccttctgatttgcactttgaatctctcgttcagcttttccgaggtcctcggaaagagtagtat |
31550073 |
T |
|
| Q |
218 |
gtgacctctcaatatccagccttgcttctctctctttagaaagagattccactgcagccttgtgtttacaaagatattttcatagcttattatgattgac |
317 |
Q |
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| T |
31550074 |
gtgacctctcaatatccagccttgcttctctctctttagaaagagattccactgcagccttgtgtttacaaagatattttcaaagcttattatgattgac |
31550173 |
T |
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| Q |
318 |
atttgctttca-nnnnnnnnnnccaaaatttaaaaggcaaaaaagacttcaaaatatttcttaccgacttctctgct |
393 |
Q |
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| T |
31550174 |
atttcctttcatttttttttttccaaaatttaaaaggcaaaaaagacttcaaaatatttcttaccgacttctctgct |
31550250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 147 - 293
Target Start/End: Complemental strand, 34649305 - 34649159
Alignment:
| Q |
147 |
ttattttaccttctgatttgcactttgaatctctcgttcagcttttccgaggtcctcggaaagagtagtatgtgacctctcaatatccagccttgcttct |
246 |
Q |
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| T |
34649305 |
ttattataccttctgatttgcagtttcaagctcacgttgagctctaccgagatcttctgatagtgttgtctgcgacctttcaaagtcaagcctagcctct |
34649206 |
T |
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| Q |
247 |
ctctctttagaaagagattccactgcagccttgtgtttacaaagata |
293 |
Q |
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|| |||||| ||||||||||| ||||||||||||||| ||||||| |
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| T |
34649205 |
ctttctttaataagagattccattgcagccttgtgtttcaaaagata |
34649159 |
T |
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