View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21531_low_1 (Length: 569)
Name: NF21531_low_1
Description: NF21531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21531_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 513; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 1 - 554
Target Start/End: Complemental strand, 41931990 - 41931441
Alignment:
| Q |
1 |
gaggttcatctattgaattaatgatacgtgtggtagcaatgtattattaggaaggattagaaagtgtgatctgaaatttctataactaaggcatatattt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41931990 |
gaggttcatctattgaattaatgatacgtgtggtagcaatgtattattaggaaggattagaaagtgtgatctgaaatttctataactaaggcatatattt |
41931891 |
T |
|
| Q |
101 |
tctctgaaacttttcagctattgaagacatttccaaaggcagcagagtatctcaagagtaagtttcattgattttctccattaattcctttcctaaaatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41931890 |
tctctgaaacttttcagctattgaagacatttccaaaggcagcagagtatctcaagagtaagtttcattgattttctccattaattcctttcctaaaatg |
41931791 |
T |
|
| Q |
201 |
aaagaagcaactacctttatttgtttaattatttatctattttgtgtagcaattgtgagctttggaaaagtttctgaagaacaaaagcaagaagttgaga |
300 |
Q |
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| T |
41931790 |
aaagaagcaactatctttatttgtttaattatttatctattttgtgtagcaattgtgagctttggaaaagtttctgaagaacaaaagcaagaagttgaga |
41931691 |
T |
|
| Q |
301 |
agttgggggtgaaaatatattcgtgggatgaatttttagaagtggtgggttattattactatttttcctcctatctgttgcaaatttgtcatgaaaaagc |
400 |
Q |
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| T |
41931690 |
agttgggggtgaaaatatattcatgggatgaatttttagaagtggtgggttattattactatttttcctcctatctgttgcaaatttgtcatgaaaaagc |
41931591 |
T |
|
| Q |
401 |
tccttctagatacacttcttgcattgcaagttttgtttctaacactcagtccagaaatgacaagaggaggttatgttttacgattgttttatcgatattt |
500 |
Q |
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| T |
41931590 |
----tctggatacacttcttgcattgcaagttttgtttctaacactcagtccagaaatgacaagaggaagttatgttttacgattgtcttatcgatattt |
41931495 |
T |
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| Q |
501 |
tgtggatggattgctcattcgagttttttaatgtatgtcacagggtcatgataa |
554 |
Q |
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|
| T |
41931494 |
tgtggttggattgctcattcgagttttttaatgtatgtcacagggtcatgataa |
41931441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 107 - 163
Target Start/End: Original strand, 2202110 - 2202166
Alignment:
| Q |
107 |
aaacttttcagctattgaagacatttccaaaggcagcagagtatctcaagagtaagt |
163 |
Q |
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| T |
2202110 |
aaacttttcagctattgaagacatttccaaatgcaacaaaatatctcaagagtaagt |
2202166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 107 - 163
Target Start/End: Original strand, 2214705 - 2214761
Alignment:
| Q |
107 |
aaacttttcagctattgaagacatttccaaaggcagcagagtatctcaagagtaagt |
163 |
Q |
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||||||||||||||||||||||||||||||| ||| | | |||||||||||||||| |
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| T |
2214705 |
aaacttttcagctattgaagacatttccaaatgcaaccaaatatctcaagagtaagt |
2214761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 248 - 354
Target Start/End: Original strand, 2202241 - 2202347
Alignment:
| Q |
248 |
agcaattgtgagctttggaaaagtttctgaagaacaaaagcaagaagttgagaagttgggggtgaaaatatattcgtgggatgaatttttagaagtggtg |
347 |
Q |
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||||||||||||||| ||||| ||| | |||||||||||||||||||| ||||| || || ||||||||| ||| |||||||||| || ||||| |
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| T |
2202241 |
agcaattgtgagcttcggaaaggttacccctgaacaaaagcaagaagttgaaaagtttggattggcaatatattcatggactgaatttttacaattggtg |
2202340 |
T |
|
| Q |
348 |
ggttatt |
354 |
Q |
| |
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|||||| |
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|
| T |
2202341 |
agttatt |
2202347 |
T |
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