View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21531_low_4 (Length: 283)
Name: NF21531_low_4
Description: NF21531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21531_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 62; Significance: 8e-27; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 19 - 104
Target Start/End: Original strand, 12730221 - 12730306
Alignment:
| Q |
19 |
aagtcgatcagattacttatgttaagatatttaattaatgttctatcaactaaaatgtataaatacaacttggttgatatattgaa |
104 |
Q |
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| T |
12730221 |
aagtcgatcagattacttgggttaagatatttcattaatgctctatcaactaaagtgtataaatacaacttcgttgatatattgaa |
12730306 |
T |
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Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 203 - 268
Target Start/End: Original strand, 12730757 - 12730822
Alignment:
| Q |
203 |
gccttccattgatgttcatgagaaccatctcatgatgactaaaatgattgaatattcaatgaaaat |
268 |
Q |
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| T |
12730757 |
gccttccattgatgttcatgagaatgatctcatgatgactaaaatgattgaatattcaatgaaaat |
12730822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 96 - 138
Target Start/End: Original strand, 12730650 - 12730692
Alignment:
| Q |
96 |
tatattgaaaggatataaatttaagctctaagtgtgttctcaa |
138 |
Q |
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| T |
12730650 |
tatattgaaaggatataaatttaagctctaagtgtgttctcaa |
12730692 |
T |
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