View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21532_high_18 (Length: 247)
Name: NF21532_high_18
Description: NF21532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21532_high_18 |
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| [»] scaffold0224 (1 HSPs) |
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Alignment Details
Target: scaffold0224 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: scaffold0224
Description:
Target: scaffold0224; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 20047 - 20290
Alignment:
| Q |
1 |
ttaccactttgatttctcttaatttcactttaatcctctttagtgattccatatgtttttctctttcttt-actaccttgtcaaatattaaattccactt |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
20047 |
ttaccactttgatttctcttaatttcactttaatcctctttagtgattccatatgtttttctctttcttttactaccttgtcaaatattaaattccactt |
20146 |
T |
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| Q |
100 |
gactattccaaaattcagccacgcctcttttaagataaacttacctaagcttaaaacatcaacaaacaaaaggaagatgtgaagacaacctaactctctc |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
20147 |
gactattccaaaattcagccacgcctcttttaagataaacttacctaagcttaaaacatcaacaaacaaaaggaagatgtgaagacaacttaactctctc |
20246 |
T |
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| Q |
200 |
aaatcattgcacgcatacaccatcatcaacacccatattcttgg |
243 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
20247 |
aaatcattgcacgcatacaccatcatcaacacccatcttcttgg |
20290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 42832967 - 42833210
Alignment:
| Q |
1 |
ttaccactttgatttctcttaatttcactttaatcctctttagtgattccatatgtttttctctttcttt-actaccttgtcaaatattaaattccactt |
99 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
42832967 |
ttaccactttgatttctcttaatttcactttaatcctctttagtgattccatatgtttttctctttcttttactaccttgtcaaatattaaattccactt |
42833066 |
T |
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| Q |
100 |
gactattccaaaattcagccacgcctcttttaagataaacttacctaagcttaaaacatcaacaaacaaaaggaagatgtgaagacaacctaactctctc |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
42833067 |
gactattccaaaattcagccacgcctcttttaagataaacttacctaagcttaaaacatcaacaaacaaaaggaagatgtgaagacaacttaactctctc |
42833166 |
T |
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| Q |
200 |
aaatcattgcacgcatacaccatcatcaacacccatattcttgg |
243 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
42833167 |
aaatcattgcacgcatacaccatcatcaacacccatcttcttgg |
42833210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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