View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21532_high_2 (Length: 491)

Name: NF21532_high_2
Description: NF21532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21532_high_2
NF21532_high_2
[»] chr2 (10 HSPs)
chr2 (1-326)||(35370945-35371277)
chr2 (393-484)||(35371362-35371453)
chr2 (180-242)||(28282670-28282732)
chr2 (406-463)||(35348433-35348490)
chr2 (180-242)||(16576268-16576330)
chr2 (168-262)||(16576425-16576519)
chr2 (180-245)||(16863476-16863541)
chr2 (439-484)||(35345904-35345949)
chr2 (403-455)||(35355372-35355425)
chr2 (181-234)||(35373728-35373781)
[»] chr5 (5 HSPs)
chr5 (168-241)||(2243310-2243383)
chr5 (196-262)||(7113758-7113824)
chr5 (180-241)||(7215291-7215351)
chr5 (170-209)||(972839-972878)
chr5 (170-206)||(14258907-14258943)
[»] chr7 (2 HSPs)
chr7 (176-235)||(34891381-34891440)
chr7 (171-265)||(34891544-34891638)
[»] chr8 (3 HSPs)
chr8 (176-264)||(32166606-32166694)
chr8 (170-245)||(37010335-37010410)
chr8 (39-72)||(9964275-9964308)
[»] chr4 (3 HSPs)
chr4 (190-262)||(22050727-22050796)
chr4 (176-233)||(54000218-54000275)
chr4 (193-249)||(25062352-25062408)
[»] chr1 (5 HSPs)
chr1 (168-246)||(7749011-7749089)
chr1 (180-241)||(68117-68178)
chr1 (180-241)||(52432681-52432742)
chr1 (107-141)||(39734322-39734356)
chr1 (168-241)||(35956991-35957064)
[»] chr3 (2 HSPs)
chr3 (180-249)||(20519282-20519351)
chr3 (168-233)||(42091793-42091858)


Alignment Details
Target: chr2 (Bit Score: 169; Significance: 2e-90; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 35370945 - 35371277
Alignment:
Q  1 gagcaaaaggaagtaccattataca------tatatagctcaacaaaaatatatatagaccaacaatatttgcatactagtannnnnnnnnnnnnn--aa 92  Q
    |||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||||| |||||||||                ||    
T  35370945 gagcaaaaggaagtaccattatacaatatcatatatagctcaacaaaaatatatatagaccaacaatatttgtatactagtataattttattttttttaa 35371044  T
Q  93 agttcggggggacc-tggcctctgttggtcccctttctagcttcatctctggtgtcacgaatagannnnnnnnnnnacaattatttatcattttcatatc 191  Q
    ||||| |||||||| |||||||||||||||||| |||||||| ||||| ||||||||||||||||           ||||| ||||| ||||||||||||    
T  35371045 agttcagggggaccgtggcctctgttggtcccccttctagctccatctttggtgtcacgaatagattttttttt--acaatcatttaccattttcatatc 35371142  T
Q  192 aagaacatcaaacttctttattaccttcatttaatatgtgatctccatctcctttgtttgataattgaatcttacctttaaaactatatcatgctatgct 291  Q
    ||||||||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35371143 aagaacatcaaacttctttgttaccttcatttaacatgtgatttccatctcctttgtttgataattgaatcttacctttaaaactatatcatgctatgct 35371242  T
Q  292 aagaaacatggcatagaaatccatggatgaagaga 326  Q
    |||||||||||||||||||| ||||||||||||||    
T  35371243 aagaaacatggcatagaaattcatggatgaagaga 35371277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 393 - 484
Target Start/End: Original strand, 35371362 - 35371453
Alignment:
Q  393 gtagtaccgttaatgacatctagcctatttataagcaataacaaactaatagttaagtactaatttcgaactatattaatcgactaccaact 484  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35371362 gtagtaccgttaatgacatctagcctatttataagcaataacaaactaatagttaagtactaatttcgaactatattaatcgactaccaact 35371453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 180 - 242
Target Start/End: Original strand, 28282670 - 28282732
Alignment:
Q  180 cattttcatatcaagaacatcaaacttctttattaccttcatttaatatgtgatctccatctc 242  Q
    ||||||||| || | ||||||||||||||||||   ||||||| |||||||||||||||||||    
T  28282670 cattttcatctccataacatcaaacttctttatctgcttcattcaatatgtgatctccatctc 28282732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 406 - 463
Target Start/End: Complemental strand, 35348490 - 35348433
Alignment:
Q  406 tgacatctagcctatttataagcaataacaaactaatagttaagtactaatttcgaac 463  Q
    ||||||| |||||||||| | ||| |||||||| |||||||||||||||| |||||||    
T  35348490 tgacatcgagcctatttacaggcactaacaaacaaatagttaagtactaaattcgaac 35348433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 180 - 242
Target Start/End: Original strand, 16576268 - 16576330
Alignment:
Q  180 cattttcatatcaagaacatcaaacttctttattaccttcatttaatatgtgatctccatctc 242  Q
    ||||||| | |||||||||||||||||||| ||  |||||||| || ||||||||||| ||||    
T  16576268 cattttcctctcaagaacatcaaacttcttcatctccttcattcaacatgtgatctccttctc 16576330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 168 - 262
Target Start/End: Original strand, 16576425 - 16576519
Alignment:
Q  168 acaattatttatcattttcatatcaagaacatcaaacttctttattaccttcatttaatatgtgatctccatctcctttgtttgataattgaatc 262  Q
    ||||| ||||||||||||||| |||| |||| ||||| |||| ||  ||||||||||| |||  |||||||||| ||| |||  || ||||||||    
T  16576425 acaatcatttatcattttcatttcaaaaacaacaaacatcttcatatccttcatttaacatgcaatctccatcttcttcgttacattattgaatc 16576519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 180 - 245
Target Start/End: Original strand, 16863476 - 16863541
Alignment:
Q  180 cattttcatatcaagaacatcaaacttctttattaccttcatttaatatgtgatctccatctcctt 245  Q
    ||||||||| |||||||||||||| ||||| ||   ||| ||| |||||||||||| |||||||||    
T  16863476 cattttcatctcaagaacatcaaatttcttcatcttctttattcaatatgtgatctacatctcctt 16863541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 439 - 484
Target Start/End: Original strand, 35345904 - 35345949
Alignment:
Q  439 taatagttaagtactaatttcgaactatattaatcgactaccaact 484  Q
    ||||||||||||||||||||  ||||||||||| ||||||| ||||    
T  35345904 taatagttaagtactaatttttaactatattaaacgactactaact 35345949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 403 - 455
Target Start/End: Original strand, 35355372 - 35355425
Alignment:
Q  403 taatgacatctagcctattta-taagcaataacaaactaatagttaagtactaa 455  Q
    |||||||||| |||||||| | || ||| |||||||||||||||||||||||||    
T  35355372 taatgacatcgagcctattaaataggcactaacaaactaatagttaagtactaa 35355425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 234
Target Start/End: Original strand, 35373728 - 35373781
Alignment:
Q  181 attttcatatcaagaacatcaaacttctttattaccttcatttaatatgtgatc 234  Q
    |||||||| |||||||| |||||||||||  ||||||||||| || ||||||||    
T  35373728 attttcatctcaagaacgtcaaacttcttctttaccttcattcaacatgtgatc 35373781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 168 - 241
Target Start/End: Complemental strand, 2243383 - 2243310
Alignment:
Q  168 acaattatttatcattttcatatcaagaacatcaaacttctttattaccttcatttaatatgtgatctccatct 241  Q
    ||||||| ||| ||||||||| |||||||||||||||||||| ||  |||||||| || |||||||||||||||    
T  2243383 acaattagttaccattttcatctcaagaacatcaaacttcttcatatccttcattcaacatgtgatctccatct 2243310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 196 - 262
Target Start/End: Complemental strand, 7113824 - 7113758
Alignment:
Q  196 acatcaaacttctttattaccttcatttaatatgtgatctccatctcctttgtttgataattgaatc 262  Q
    |||||||| |||||||| |||||||||||| ||||||| | |||||| ||||||  |||||||||||    
T  7113824 acatcaaatttctttatcaccttcatttaagatgtgatttacatctcttttgttccataattgaatc 7113758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 180 - 241
Target Start/End: Complemental strand, 7215351 - 7215291
Alignment:
Q  180 cattttcatatcaagaacatcaaacttctttattaccttcatttaatatgtgatctccatct 241  Q
    ||||||||| ||||||||||||||||||||| |   ||||||| ||||||||||||||||||    
T  7215351 cattttcatctcaagaacatcaaacttcttt-tcttcttcattgaatatgtgatctccatct 7215291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 170 - 209
Target Start/End: Original strand, 972839 - 972878
Alignment:
Q  170 aattatttatcattttcatatcaagaacatcaaacttctt 209  Q
    ||||| ||||||||||||| ||||||||||||||||||||    
T  972839 aattagttatcattttcatctcaagaacatcaaacttctt 972878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 170 - 206
Target Start/End: Complemental strand, 14258943 - 14258907
Alignment:
Q  170 aattatttatcattttcatatcaagaacatcaaactt 206  Q
    ||||||||||||||||||| |||| ||||||||||||    
T  14258943 aattatttatcattttcatctcaaaaacatcaaactt 14258907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 176 - 235
Target Start/End: Original strand, 34891381 - 34891440
Alignment:
Q  176 ttatcattttcatatcaagaacatcaaacttctttattaccttcatttaatatgtgatct 235  Q
    ||||||||||||||| |||||||||||||||||||||   |||||||||| |||||||||    
T  34891381 ttatcattttcatattaagaacatcaaacttctttatcttcttcatttaacatgtgatct 34891440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 171 - 265
Target Start/End: Original strand, 34891544 - 34891638
Alignment:
Q  171 attatttatcattttcatatcaagaacatcaaacttctttattaccttcatttaatatgtgatctccatctcctttgtttgataattgaatctta 265  Q
    |||| |||||||||| || |||||||||||||| ||||| ||  |||||||| || ||||||||||||| | ||| |||  | ||||||||||||    
T  34891544 attagttatcattttgatctcaagaacatcaaatttcttcatctccttcattcaacatgtgatctccatttgcttcgttataaaattgaatctta 34891638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 176 - 264
Target Start/End: Complemental strand, 32166694 - 32166606
Alignment:
Q  176 ttatcattttcatatcaagaacatcaaacttctttattaccttcatttaatatgtgatctccatctcctttgtttgataattgaatctt 264  Q
    ||||||||||||| |||||||||||||||||||| ||  |||| ||| || |||| |||| |||||| || |||| | |||||||||||    
T  32166694 ttatcattttcatctcaagaacatcaaacttcttcatctcctttattcaacatgtaatcttcatctctttcgttttagaattgaatctt 32166606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 170 - 245
Target Start/End: Complemental strand, 37010410 - 37010335
Alignment:
Q  170 aattatttatcattttcatatcaagaacatcaaacttctttattaccttcatttaatatgtgatctccatctcctt 245  Q
    ||||| ||| ||||||||| |||| |||||||||||| || ||| | ||||||||| |||||||||| ||||||||    
T  37010410 aattagttaccattttcatctcaaaaacatcaaacttattcatttctttcatttaacatgtgatctctatctcctt 37010335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 72
Target Start/End: Original strand, 9964275 - 9964308
Alignment:
Q  39 aaaaatatatatagaccaacaatatttgcatact 72  Q
    ||||||||||||||||||| ||||||||||||||    
T  9964275 aaaaatatatatagaccaaaaatatttgcatact 9964308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 190 - 262
Target Start/End: Original strand, 22050727 - 22050796
Alignment:
Q  190 tcaagaacatcaaacttctttattaccttcatttaatatgtgatctccatctcctttgtttgataattgaatc 262  Q
    |||| ||||||||||||||| ||| ||||||||||| ||||||||||||   ||||||||| ||||| |||||    
T  22050727 tcaacaacatcaaacttcttcatttccttcatttaacatgtgatctcca---cctttgtttcataatcgaatc 22050796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 233
Target Start/End: Complemental strand, 54000275 - 54000218
Alignment:
Q  176 ttatcattttcatatcaagaacatcaaacttctttattaccttcatttaatatgtgat 233  Q
    |||||||||| || | || ||||||||||||||||||  ||||||||||| |||||||    
T  54000275 ttatcatttttatcttaaaaacatcaaacttctttatctccttcatttaagatgtgat 54000218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 193 - 249
Target Start/End: Original strand, 25062352 - 25062408
Alignment:
Q  193 agaacatcaaacttctttattaccttcatttaatatgtgatctccatctcctttgtt 249  Q
    ||||||||||||||||| ||   ||||||| || ||||||||| |||||||||||||    
T  25062352 agaacatcaaacttcttcatctgcttcattaaacatgtgatcttcatctcctttgtt 25062408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 168 - 246
Target Start/End: Original strand, 7749011 - 7749089
Alignment:
Q  168 acaattatttatcattttcatatcaagaacatcaaacttctttattaccttcatttaatatgtgatctccatctccttt 246  Q
    ||||| || ||| |||||||| |||||||||||||| ||||| |||  |||  ||||| ||||||||||||||||||||    
T  7749011 acaatcatatattattttcatctcaagaacatcaaatttcttcattttctttgtttaacatgtgatctccatctccttt 7749089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 180 - 241
Target Start/End: Original strand, 68117 - 68178
Alignment:
Q  180 cattttcatatcaagaacatcaaacttctttattaccttcatttaatatgtgatctccatct 241  Q
    |||||| || ||||||||||| |||||||| ||  ||||||||||| |||||||||||||||    
T  68117 catttttatttcaagaacatctaacttcttcatctccttcatttaacatgtgatctccatct 68178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 180 - 241
Target Start/End: Original strand, 52432681 - 52432742
Alignment:
Q  180 cattttcatatcaagaacatcaaacttctttattaccttcatttaatatgtgatctccatct 241  Q
    ||||||||| |||||||||| ||||||||| ||  ||||||||||| | |||||||||||||    
T  52432681 cattttcatctcaagaacattaaacttcttcatctccttcatttaacaagtgatctccatct 52432742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 107 - 141
Target Start/End: Complemental strand, 39734356 - 39734322
Alignment:
Q  107 tggcctctgttggtcccctttctagcttcatctct 141  Q
    |||||||||||||||||| ||||||||||||||||    
T  39734356 tggcctctgttggtcccccttctagcttcatctct 39734322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 241
Target Start/End: Original strand, 35956991 - 35957064
Alignment:
Q  168 acaattatttatcattttcatatcaagaacatcaaacttctttattaccttcatttaatatgtgatctccatct 241  Q
    ||||||| ||| |||||| || |||| |||||||||||| |  ||| | || ||||||||||||||||||||||    
T  35956991 acaattaattaccatttttatctcaaaaacatcaaacttttccatttcttttatttaatatgtgatctccatct 35957064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 180 - 249
Target Start/End: Complemental strand, 20519351 - 20519282
Alignment:
Q  180 cattttcatatcaagaacatcaaacttctttattaccttcatttaatatgtgatctccatctcctttgtt 249  Q
    ||||||||| |||||||| ||||| ||||| ||  | |||||| || |||||||||||||||||||||||    
T  20519351 cattttcatctcaagaacgtcaaatttcttcatctctttcattaaacatgtgatctccatctcctttgtt 20519282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 233
Target Start/End: Complemental strand, 42091858 - 42091793
Alignment:
Q  168 acaattatttatcattttcatatcaagaacatcaaacttctttattaccttcatttaatatgtgat 233  Q
    ||||||| ||||||||||||| |||| |||||||||||| || ||  | ||||||||| |||||||    
T  42091858 acaattaattatcattttcatctcaaaaacatcaaactttttcatctctttcatttaacatgtgat 42091793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University