View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21532_high_5 (Length: 343)

Name: NF21532_high_5
Description: NF21532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21532_high_5
NF21532_high_5
[»] chr8 (4 HSPs)
chr8 (40-329)||(42193412-42193701)
chr8 (54-162)||(39174286-39174396)
chr8 (54-162)||(32553464-32553574)
chr8 (54-162)||(35799913-35800023)
[»] chr7 (3 HSPs)
chr7 (118-303)||(23484478-23484663)
chr7 (45-186)||(19278728-19278871)
chr7 (98-211)||(38645457-38645570)
[»] chr1 (2 HSPs)
chr1 (45-186)||(3978899-3979042)
chr1 (49-165)||(22590013-22590131)
[»] chr3 (4 HSPs)
chr3 (45-163)||(13077572-13077692)
chr3 (45-186)||(54653554-54653697)
chr3 (122-164)||(47807289-47807331)
chr3 (122-186)||(51825200-51825264)
[»] chr2 (4 HSPs)
chr2 (54-147)||(23233260-23233355)
chr2 (49-165)||(30934942-30935060)
chr2 (122-186)||(42027657-42027721)
chr2 (45-90)||(42027578-42027623)
[»] chr4 (2 HSPs)
chr4 (93-171)||(1189496-1189574)
chr4 (122-164)||(26788980-26789022)


Alignment Details
Target: chr8 (Bit Score: 238; Significance: 1e-132; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 40 - 329
Target Start/End: Original strand, 42193412 - 42193701
Alignment:
Q  40 atgatcacaccaccaccaccattgaaatcctctctccttcctcttcaaaaacaccctattatttctatatcggtgaggtttcaaaaaccccaaccaccac 139  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42193412 atgatcacactaccaccaccattgaaatcctctctccttcctcttcaaaaacaccctattatttctatatcggtgaggtttcaaaaaccccaaccaccac 42193511  T
Q  140 cttctctcttactttccggccaccatgaaccaccatctgaaaaactagacgcaccgtctttttccttgtgatgttcgnnnnnnnntccctaaacttaatt 239  Q
    ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||        |||||||||||||||    
T  42193512 cttctctcttactttccagccaccatggaccaccatctgaaaaactagacgcaccgtatttttccttgtgatgttcgaaaaaaaatccctaaacttaatt 42193611  T
Q  240 cttgatcgaaacattttcacctgcgaccaccgtgctggagctaacctccaccgcgtcgggaatcgtatcctccgtgccggaaaacgtgat 329  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||||||||    
T  42193612 cttgatcgaaacattttcacctgcgaccaccgtgctggagctaacctccaccgcgtcgagaatcgtatccttcgtgccgaaaaacgtgat 42193701  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 54 - 162
Target Start/End: Complemental strand, 39174396 - 39174286
Alignment:
Q  54 accaccattgaaatcctctctccttcctcttcaaaaa-caccctattattt-ctatatcggtgaggtttcaaaaaccccaaccaccaccttctctcttac 151  Q
    ||||||||| || |||||||| ||||||||||||||| |||||  | |||| ||| ||| ||||  ||||||||||||||| || |||||||||||||      
T  39174396 accaccattaaattcctctcttcttcctcttcaaaaatcacccattcattttctagatctgtgaaatttcaaaaaccccaatcatcaccttctctcttgt 39174297  T
Q  152 tttccggccac 162  Q
    |||||||||||    
T  39174296 tttccggccac 39174286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 162
Target Start/End: Complemental strand, 32553574 - 32553464
Alignment:
Q  54 accaccattgaaatcctctctccttcctcttcaaaaa-caccctattattt-ctatatcggtgaggtttcaaaaaccccaaccaccaccttctctcttac 151  Q
    ||||||||| || |||||||| ||||||||||||||| |||||  | |||| ||| ||| ||||  ||||||||||||| | || |||||||||||||      
T  32553574 accaccattaaattcctctcttcttcctcttcaaaaatcacccattcattttctagatctgtgaaatttcaaaaacccctatcatcaccttctctcttgt 32553475  T
Q  152 tttccggccac 162  Q
    |||||||||||    
T  32553474 tttccggccac 32553464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 162
Target Start/End: Original strand, 35799913 - 35800023
Alignment:
Q  54 accaccattgaaatcctctctccttcctcttcaaaaa-caccctattattt-ctatatcggtgaggtttcaaaaaccccaaccaccaccttctctcttac 151  Q
    ||||||||| || |||||||| |||||||| |||||| |||||  | |||| ||| ||| ||||  ||||||||||||||| || |||||||||||||      
T  35799913 accaccattaaattcctctcttcttcctctacaaaaatcacccattcattttctagatctgtgaaatttcaaaaaccccaatcatcaccttctctctttt 35800012  T
Q  152 tttccggccac 162  Q
    |||||||||||    
T  35800013 tttccggccac 35800023  T

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Target: chr7 (Bit Score: 78; Significance: 3e-36; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 118 - 303
Target Start/End: Complemental strand, 23484663 - 23484478
Alignment:
Q  118 tttcaaaaaccccaaccaccaccttctctcttactttccggccaccatgaaccaccatctgaaaaactagacgcaccgtctttttccttgtgatgttcgn 217  Q
    ||||||||| | |||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||| | ||||| |||| ||||||||||||| ||     
T  23484663 tttcaaaaatctcaaccaccaccttctctcttactttccggccaccttgaaccaccatttgagaaactaaatgcaccatcttcttccttgtgatgtccgt 23484564  T
Q  218 nnnnnnntccctaaacttaattcttgatcgaaacattttcacctgcgaccaccgtgctggagctaacctccaccgcgtcgggaatc 303  Q
              |||| |||| |||||||||| | |||||||||| ||||||||||||| ||||||||| ||||||||||| ||||||    
T  23484563 atcaaaagttctaaccttatttcttgatcggagcattttcaccggcgaccaccgtgccggagctaacatccaccgcgtctggaatc 23484478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 45 - 186
Target Start/End: Original strand, 19278728 - 19278871
Alignment:
Q  45 cacaccaccaccaccattgaaatcctctctccttcctcttcaaaaa--caccctattatttctatatcggtgaggtttcaaaaaccccaaccaccacctt 142  Q
    ||||||||||||||||||||| | |||||  |||||||||||||||  ||||   |||||  || || ||| || ||| |||||||| ||||||||||||    
T  19278728 cacaccaccaccaccattgaactactctcatcttcctcttcaaaaagccaccaacttattattagattggtaagattttaaaaaccctaaccaccacctt 19278827  T
Q  143 ctctcttactttccggccaccatgaaccaccatctgaaaaacta 186  Q
    ||||||||||||||||||||||  || | |||| ||||||||||    
T  19278828 ctctcttactttccggccaccacaaatctccatttgaaaaacta 19278871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 98 - 211
Target Start/End: Original strand, 38645457 - 38645570
Alignment:
Q  98 ttatttctatatcggtgaggtttcaaaaaccccaaccaccaccttctctcttactttccggccaccatgaaccaccatctgaaaaactagacgcaccgtc 197  Q
    ||||||||| || ||||| ||||||||||||||||| ||||| |||||||||||||| |||||||| ||| ||||| | || |||||||  | |||| ||    
T  38645457 ttatttctagattggtgaagtttcaaaaaccccaactaccacattctctcttacttttcggccaccgtgagccaccgtttggaaaactaatcccaccatc 38645556  T
Q  198 tttttccttgtgat 211  Q
    |  |||||||||||    
T  38645557 tccttccttgtgat 38645570  T

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Target: chr1 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 45 - 186
Target Start/End: Complemental strand, 3979042 - 3978899
Alignment:
Q  45 cacaccaccaccaccattgaaatcctctctccttcctcttcaaaaa--caccctattatttctatatcggtgaggtttcaaaaaccccaaccaccacctt 142  Q
    ||||||||||||||||||||| | |||||  |||||||||||||||  ||||   |||||  || || ||| || ||| |||||||| ||||||||||||    
T  3979042 cacaccaccaccaccattgaactactctcatcttcctcttcaaaaagccaccaacttattattagattggtaagattttaaaaaccctaaccaccacctt 3978943  T
Q  143 ctctcttactttccggccaccatgaaccaccatctgaaaaacta 186  Q
    ||||| ||||||||||||||||  || | |||| ||||||||||    
T  3978942 ctctcctactttccggccaccacaaatctccatttgaaaaacta 3978899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 49 - 165
Target Start/End: Complemental strand, 22590131 - 22590013
Alignment:
Q  49 ccaccaccaccattgaaatcctctctccttcctcttcaaaaacacccta--ttatttctatatcggtgag-gtttcaaaaaccccaaccaccaccttctc 145  Q
    ||||||| |||||| || |||| ||| |||||||||||| ||| | |||  |||||| || || |||||| |||| ||| |||| || ||||||||||||    
T  22590131 ccaccacaaccattaaattcctttcttcttcctcttcaataac-cactaatttatttttagattggtgagagtttgaaatacccaaatcaccaccttctc 22590033  T
Q  146 tcttactttccggccaccat 165  Q
    ||||||||||||||||||||    
T  22590032 tcttactttccggccaccat 22590013  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 45 - 163
Target Start/End: Complemental strand, 13077692 - 13077572
Alignment:
Q  45 cacaccaccaccaccattgaaatcctctctccttcctcttcaaaaa--caccctattatttctatatcggtgaggtttcaaaaaccccaaccaccacctt 142  Q
    ||||||||||||||||||| | | ||||   |||||||||||||||  ||||   |||||  || || ||| || ||| |||||||| ||||||||||||    
T  13077692 cacaccaccaccaccattggactactctactcttcctcttcaaaaagccaccaacttattattagattggtaagattttaaaaaccctaaccaccacctt 13077593  T
Q  143 ctctcttactttccggccacc 163  Q
    |||||||||||||||||||||    
T  13077592 ctctcttactttccggccacc 13077572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 45 - 186
Target Start/End: Complemental strand, 54653697 - 54653554
Alignment:
Q  45 cacaccaccaccaccattgaaatcctctctccttcctcttcaaaaa--caccctattatttctatatcggtgaggtttcaaaaaccccaaccaccacctt 142  Q
    ||||||||||||||||||||| | |||||  |||||| ||||||||  ||||   |||||  || || ||| || ||| |||||||| ||||||||||||    
T  54653697 cacaccaccaccaccattgaactactctcatcttcctattcaaaaagccaccaacttattattagattggtaagattttaaaaaccctaaccaccacctt 54653598  T
Q  143 ctctcttactttccggccaccatgaaccaccatctgaaaaacta 186  Q
    |||||||||||| | |||||||  || | |||| ||||||||||    
T  54653597 ctctcttacttttcagccaccacaaatctccatttgaaaaacta 54653554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 122 - 164
Target Start/End: Original strand, 47807289 - 47807331
Alignment:
Q  122 aaaaaccccaaccaccaccttctctcttactttccggccacca 164  Q
    |||||||| |||||||||||||||||| |||||||||||||||    
T  47807289 aaaaaccctaaccaccaccttctctctcactttccggccacca 47807331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 186
Target Start/End: Complemental strand, 51825264 - 51825200
Alignment:
Q  122 aaaaaccccaaccaccaccttctctcttactttccggccaccatgaaccaccatctgaaaaacta 186  Q
    |||||||| |||| ||||||||||||||||||||| |||||||  || | |||| ||||||||||    
T  51825264 aaaaaccctaacccccaccttctctcttactttccagccaccacaaatctccatttgaaaaacta 51825200  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 54 - 147
Target Start/End: Complemental strand, 23233355 - 23233260
Alignment:
Q  54 accaccattgaaatcctctctccttcctcttcaaaaa-caccctatta-tttctatatcggtgaggtttcaaaaaccccaaccaccaccttctctc 147  Q
    ||||||||| || |||||||| ||||||||||||||| |||||  ||| |||||| ||| ||||  ||||||||||||||| || |||||||||||    
T  23233355 accaccattaaattcctctcttcttcctcttcaaaaatcacccatttattttctagatctgtgaaatttcaaaaaccccaatcatcaccttctctc 23233260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 165
Target Start/End: Original strand, 30934942 - 30935060
Alignment:
Q  49 ccaccaccaccattgaaatcctctctccttcctcttcaaaaacacccta--ttatttctatatcggtgag-gtttcaaaaaccccaaccaccaccttctc 145  Q
    ||||||| |||||| || |||| ||| |||||||||||| ||| | |||  |||||| || || |||||| |||| ||| |||| || ||||||||||||    
T  30934942 ccaccacaaccattaaattcctttcttcttcctcttcaataac-cactaatttatttttagattggtgagagtttgaaatacccaaatcaccaccttctc 30935040  T
Q  146 tcttactttccggccaccat 165  Q
    |||||||||||||| |||||    
T  30935041 tcttactttccggctaccat 30935060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 186
Target Start/End: Original strand, 42027657 - 42027721
Alignment:
Q  122 aaaaaccccaaccaccaccttctctcttactttccggccaccatgaaccaccatctgaaaaacta 186  Q
    |||||||| || || ||||||||||||||||||||||||||||  || | |||| ||||||||||    
T  42027657 aaaaaccctaagcatcaccttctctcttactttccggccaccacaaatctccatttgaaaaacta 42027721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 90
Target Start/End: Original strand, 42027578 - 42027623
Alignment:
Q  45 cacaccaccaccaccattgaaatcctctctccttcctcttcaaaaa 90  Q
    ||||||||||||||||||||| | |||||  |||||||||||||||    
T  42027578 cacaccaccaccaccattgaactactctcatcttcctcttcaaaaa 42027623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 93 - 171
Target Start/End: Original strand, 1189496 - 1189574
Alignment:
Q  93 ccctattatttctatatcggtgaggtttcaaaaaccccaaccaccaccttctctcttactttccggccaccatgaacca 171  Q
    |||||||||||||| ||| ||||| |||||||||   ||| ||||||||||||||| ||||||  ||||||||| ||||    
T  1189496 ccctattatttctagatctgtgagatttcaaaaagttcaatcaccaccttctctctcactttctagccaccatggacca 1189574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 164
Target Start/End: Original strand, 26788980 - 26789022
Alignment:
Q  122 aaaaaccccaaccaccaccttctctcttactttccggccacca 164  Q
    |||||||| |||| ||||||||||||||| |||||||||||||    
T  26788980 aaaaaccctaaccgccaccttctctcttattttccggccacca 26789022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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