View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21532_high_6 (Length: 339)
Name: NF21532_high_6
Description: NF21532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21532_high_6 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 331
Target Start/End: Complemental strand, 19307006 - 19306676
Alignment:
| Q |
1 |
ttttttggggtttgtcccannnnnnncctgctgaattatagcagtagtgttatagcagcttctgccatacattgactttgtattttgaatggaatataca |
100 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19307006 |
ttttttggggtttgtcccatttttttcctgctgaattatagcagtagtgttatagcagcttctgccatacattgactttgtattttgaatggaatataca |
19306907 |
T |
|
| Q |
101 |
atattttgctagcctaattgtgttatagcagcctctatcatttgttcgtttctatttatgcgttttttcgcttatgaattttttcgcttattgagttgtt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
19306906 |
atattttgctagcctaattgtgttatagcagcctctatcatttgttcgtttctatttatgcgttttttcgcttatgaattttttcgcttattaagttgtt |
19306807 |
T |
|
| Q |
201 |
tcaattgcacatccatattgaattaaatattaacaattatattgagttgttttataatacatgtacattgtgtcaatgatcaaattatctgcatgtacat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19306806 |
tcaattgcacatccatattgaattaaatattaacaattatattgagttgttttataatacatgtacattgtgtcaatgatcaaattatctgcatgtacat |
19306707 |
T |
|
| Q |
301 |
tgtgttgtcaacaactttctctgcttcatct |
331 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
19306706 |
tgtgttgtcaacaactttctctgcttcatct |
19306676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 331
Target Start/End: Complemental strand, 10123578 - 10123264
Alignment:
| Q |
1 |
ttttttggggtttgtcccannnnnnncctgctgaattatagcagtagtgttatagcagcttctgccatacattgactttgtattttgaatggaatataca |
100 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
10123578 |
ttttttgcggtttgtcccatttttttcctgctgaattatagcagtagttttatagcagcttctgccatacattgactttgtattttgaatgcaatataca |
10123479 |
T |
|
| Q |
101 |
atattttgctagcctaattgtgttatagcagcctctatcatttgttcgtttctatttatgcgttttttcgcttatgaattttttcgcttattgagttgtt |
200 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
10123478 |
atattttgttagcctaattgtgttatagcagcctctatcatttgttcgtttctatttatgcgttttttcgcttat----------------tgagttgtt |
10123395 |
T |
|
| Q |
201 |
tcaattgcacatccatattgaattaaatattaacaattatattgagttgttttataatacatgtacattgtgtcaatgatcaaattatctgcatgtacat |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |
|
|
| T |
10123394 |
tcaattgcacatccatattgaattaaatattaacaattatattgagttgttttataatacatgtacattgtgtcaatgatccaattttctgcatgtacat |
10123295 |
T |
|
| Q |
301 |
tgtgttgtcaacaactttctctgcttcatct |
331 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |
|
|
| T |
10123294 |
tgtgttgtcaacaactttctctgtttcatct |
10123264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 331
Target Start/End: Complemental strand, 28245351 - 28245020
Alignment:
| Q |
1 |
ttttttggggtttgtcccannnnnnncctgctgaattatagcagtagtgttatagcagcttctgccatacattgactttgtattttgaatggaatataca |
100 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28245351 |
ttttttggggtttgtcccatttttttcctgctgaattatagcagtagttttatagcagcttctgccatacattgactttgtattttgaatggaatataca |
28245252 |
T |
|
| Q |
101 |
atattttgctagcctaattgtgttatagcagcctctatcatttgttcgtttctatttatgcgtttttt-cgcttatgaattttttcgcttattgagttgt |
199 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
28245251 |
atattttgttagcctaattgtgttatagcagcctctgtcatttgtttgtttctatttatgcgtttttttcgcttatgcattttttcgcttattgagttgt |
28245152 |
T |
|
| Q |
200 |
ttcaattgcacatccatattgaattaaatattaacaattatattgagttgttttataatacatgtacattgtgtcaatgatcaaattatctgcatgtaca |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |
|
|
| T |
28245151 |
ttcaattgcacatccatattgaattaaatattaacaattatattgagttgttttataatacatgtacattgtgtcaatgatccaattttctgcatgtaca |
28245052 |
T |
|
| Q |
300 |
ttgtgttgtcaacaactttctctgcttcatct |
331 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |
|
|
| T |
28245051 |
ttgtgttgtcaacaactttctctgtttcatct |
28245020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 11474779 - 11474939
Alignment:
| Q |
1 |
ttttttggggtttgtcccannnnnnncctgctgaattatagcagtagtgttatagcagcttctgccatacattgactttgtattttgaatggaatataca |
100 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11474779 |
ttttttggggtttgtcccatttttttcctgctgaattatagcagcacttttatagcagcttctgccatacattgactttgtattttgaatggaatataca |
11474878 |
T |
|
| Q |
101 |
atattttgctagcctaattgtgttatagcagcctctatcatttgttcgtttctatttatgc |
161 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
11474879 |
atattttgctagcttaattgtgttatagcagcctctgtcatttgttcgtttctatttatgc |
11474939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 11502819 - 11502979
Alignment:
| Q |
1 |
ttttttggggtttgtcccannnnnnncctgctgaattatagcagtagtgttatagcagcttctgccatacattgactttgtattttgaatggaatataca |
100 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11502819 |
ttttttggggtttgtcccatttttttcctgctgaattatagcagcacttttatagcagcttctgccatacattgactttgtattttgaatggaatataca |
11502918 |
T |
|
| Q |
101 |
atattttgctagcctaattgtgttatagcagcctctatcatttgttcgtttctatttatgc |
161 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
11502919 |
atattttgctagcttaattgtgttatagcagcctctgtcatttgttcgtttctatttatgc |
11502979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 115 - 157
Target Start/End: Original strand, 11474970 - 11475012
Alignment:
| Q |
115 |
taattgtgttatagcagcctctatcatttgttcgtttctattt |
157 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
11474970 |
taattgtgttatagcagcctctgtcatttgttcgtttctattt |
11475012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 115 - 157
Target Start/End: Original strand, 11503010 - 11503052
Alignment:
| Q |
115 |
taattgtgttatagcagcctctatcatttgttcgtttctattt |
157 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
11503010 |
taattgtgttatagcagcctctgtcatttgttcgtttctattt |
11503052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 27 - 331
Target Start/End: Complemental strand, 22490566 - 22490263
Alignment:
| Q |
27 |
cctgctgaattatagcagtagtgttatagcagcttctgccatacattgactttgtattttgaatggaatatacaatattttgctagcctaattgtgttat |
126 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22490566 |
cctgctgaattatagcagtagtgttatagcagcttctgccatacattgactttgtattttgaatggaatatacaatattttgctagcctaattgtgttat |
22490467 |
T |
|
| Q |
127 |
agcagcctctatcatttgttcgtttctatttatgcgttttttcgcttatgaattttttcgcttattgagttgtttcaattgcacatccatattgaattaa |
226 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| | |
|
|
| T |
22490466 |
agcagcctctgtcatttgttcgtttgtatttatgagttttttcgcttatgcattttttcgcttattgagttgtttcaattgcacatcaatattgaattga |
22490367 |
T |
|
| Q |
227 |
atattaacaattatattgagttgttttataatacatgtacattgtgtcaatgatcaaattatctgcatgtacattgtgttgtcaacaactttctctgctt |
326 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||| || ||||||| |||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
22490366 |
atattaacaattatattgagttgtttcataatacatgtacattgcgt-aatgatccaattatctacatgtacattgtgttgtcaacaactttctctgctt |
22490268 |
T |
|
| Q |
327 |
catct |
331 |
Q |
| |
|
||||| |
|
|
| T |
22490267 |
catct |
22490263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 27 - 331
Target Start/End: Original strand, 25382860 - 25383148
Alignment:
| Q |
27 |
cctgctgaattatagcagtagtgttatagcagcttctgccatacattgactttgtattttgaatggaatatacaatattttgctagcctaattgtgttat |
126 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25382860 |
cctgctgaattatagcagtagtgttatagcagcctctgccatacattgactttgtattttgaatggaatatacaatattttgctagcctaattgtgttat |
25382959 |
T |
|
| Q |
127 |
agcagcctctatcatttgttcgtttctatttatgcgttttttcgcttatgaattttttcgcttattgagttgtttcaattgcacatccatattgaattaa |
226 |
Q |
| |
|
|||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25382960 |
agcagcctctgtcatttgttcgattctatttatgc----------------attttttcgcttattgagttgtttcaattgcacatccatattgaattaa |
25383043 |
T |
|
| Q |
227 |
atattaacaattatattgagttgttttataatacatgtacattgtgtcaatgatcaaattatctgcatgtacattgtgttgtcaacaactttctctgctt |
326 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25383044 |
atattaacaattatattgagttgtttcataatacatgtacattgtgtcaatgatccaattatctgcatgtacattgtgttgtcaacaactttctctgctt |
25383143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 134 - 203
Target Start/End: Original strand, 25483349 - 25483418
Alignment:
| Q |
134 |
tctatcatttgttcgtttctatttatgcgttttttcgcttatgaattttttcgcttattgagttgtttca |
203 |
Q |
| |
|
|||||||||| ||||||||| ||||||| |||||| |||| || |||||||| ||||||||||||||||| |
|
|
| T |
25483349 |
tctatcatttattcgtttctgtttatgcattttttagcttgtgcattttttcacttattgagttgtttca |
25483418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 120; Significance: 2e-61; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 38252187 - 38252027
Alignment:
| Q |
1 |
ttttttggggtttgtcccannnnnnncctgctgaattatagcagtagtgttatagcagcttctgccatacattgactttgtattttgaatggaatataca |
100 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38252187 |
ttttttggggtttgtcccatttttttcctgctgaattatagcagcacttttatagcagcttctgccatacattgactttgtattttgaatggaatataca |
38252088 |
T |
|
| Q |
101 |
atattttgctagcctaattgtgttatagcagcctctatcatttgttcgtttctatttatgc |
161 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
38252087 |
atattttgctagcttaattgtgttatagcagcctctgtcatttgttcgtttctatttatgc |
38252027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 43157355 - 43157515
Alignment:
| Q |
1 |
ttttttggggtttgtcccannnnnnncctgctgaattatagcagtagtgttatagcagcttctgccatacattgactttgtattttgaatggaatataca |
100 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43157355 |
ttttttggggtttgtcccatttttttcctgctgaattatagcagcacttttatagcagcttctgccatacattgactttgtattttgaatggaatataca |
43157454 |
T |
|
| Q |
101 |
atattttgctagcctaattgtgttatagcagcctctatcatttgttcgtttctatttatgc |
161 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
43157455 |
atattttgctagcttaattgtgttatagcagcctctgtcatttgttcgtttctatttatgc |
43157515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 115 - 157
Target Start/End: Complemental strand, 38251996 - 38251954
Alignment:
| Q |
115 |
taattgtgttatagcagcctctatcatttgttcgtttctattt |
157 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
38251996 |
taattgtgttatagcagcctctgtcatttgttcgtttctattt |
38251954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 115 - 157
Target Start/End: Original strand, 43157546 - 43157588
Alignment:
| Q |
115 |
taattgtgttatagcagcctctatcatttgttcgtttctattt |
157 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
43157546 |
taattgtgttatagcagcctctgtcatttgttcgtttctattt |
43157588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 108; Significance: 3e-54; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 48795410 - 48795580
Alignment:
| Q |
1 |
ttttttggggtttgtcccannnnnnncctgctgaattatagcagtagtgtt---atagcagcttctgccatacattgactttgtattttgaatggaatat |
97 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48795410 |
ttttttggggtttgtcccatttttttcctactgaattatagcagtagtgttgttatagcagcctctgccatacattgactttgtattttgaatggaatat |
48795509 |
T |
|
| Q |
98 |
acaatattttgctagcctaattgtgttatagcagcctctatcatttgttcgtttctatttatgcgtttttt |
168 |
Q |
| |
|
|||||||| ||||||||||||||||||||| || ||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
48795510 |
acaatattgtgctagcctaattgtgttataacaacctctgtcatttgttcgtttctatttatgtgtttttt |
48795580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 256 - 331
Target Start/End: Complemental strand, 44574512 - 44574437
Alignment:
| Q |
256 |
aatacatgtacattgtgtcaatgatcaaattatctgcatgtacattgtgttgtcaacaactttctctgcttcatct |
331 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
44574512 |
aatacatgtacattgtgtcaatgatccaattttctgcatgtacattgtgttgtcaacaactttctctgtttcatct |
44574437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 186 - 231
Target Start/End: Original strand, 48795583 - 48795628
Alignment:
| Q |
186 |
gcttattgagttgtttcaattgcacatccatattgaattaaatatt |
231 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||||||||| |||||| |
|
|
| T |
48795583 |
gcttgttgagttgtttcaattgcacatcaatattgaattgaatatt |
48795628 |
T |
|
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