View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21532_high_9 (Length: 312)
Name: NF21532_high_9
Description: NF21532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21532_high_9 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 6 - 312
Target Start/End: Complemental strand, 38448009 - 38447715
Alignment:
| Q |
6 |
aaatttatcttcgaggaattcacgcgactagcatccaaaccttcccaattctcttctgtatatggagaaattgatcctgacatctgatattgagtctcca |
105 |
Q |
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| T |
38448009 |
aaatttatcttagaggaattcacgcgactagcatccaaaccttcccaattctcttctgtatatggagaaattgatcctgacatctgatattgagtctcca |
38447910 |
T |
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| Q |
106 |
taggtggtggattctgagggagtggaggcagatcagattgcatagtcaaaagtataggtaaaattccagcgccacccctgaaattgacgaaagtaattgt |
205 |
Q |
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| T |
38447909 |
taggtggtggattctgagggagtggaggcagatcagattgcatagtcaaaagtataggtgaaattccagcgccacccctgaaattgacgaaagtaattgt |
38447810 |
T |
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| Q |
206 |
aaatttaacgtataannnnnnnacggaaaactattattaatattggcaacactaatagatatatataaaagagaatagcaatgcataatctactcaccta |
305 |
Q |
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| T |
38447809 |
aaatttaacgtataatttttttacagaaaactattattaatattggcaacactaatagat------------gtatagcaatgcataatctactcaccta |
38447722 |
T |
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Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 64 - 116
Target Start/End: Original strand, 53351104 - 53351156
Alignment:
| Q |
64 |
tatatggagaaattgatcctgacatctgatattgagtctccataggtggtgga |
116 |
Q |
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| T |
53351104 |
tatatggagaacttgattctgacatctgatattgagtctccataggtggtgga |
53351156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 64 - 124
Target Start/End: Complemental strand, 38343250 - 38343190
Alignment:
| Q |
64 |
tatatggagaaattgatcctgacatctgatattgagtctccataggtggtggattctgagg |
124 |
Q |
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| T |
38343250 |
tatatggagaaattgattgtgacaactgatattgagtctccataggttgtggattctgagg |
38343190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 64 - 124
Target Start/End: Complemental strand, 38447443 - 38447383
Alignment:
| Q |
64 |
tatatggagaaattgatcctgacatctgatattgagtctccataggtggtggattctgagg |
124 |
Q |
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| T |
38447443 |
tatatggagaaattgattgtgacaactgatattgagtctccataggttgtggattctgagg |
38447383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 312
Target Start/End: Complemental strand, 38343063 - 38343019
Alignment:
| Q |
268 |
atataaaagagaatagcaatgcataatctactcacctatcaatca |
312 |
Q |
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| T |
38343063 |
atataaaagagaatggcattgcataatcaactcacctatcaatca |
38343019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 312
Target Start/End: Complemental strand, 38447256 - 38447212
Alignment:
| Q |
268 |
atataaaagagaatagcaatgcataatctactcacctatcaatca |
312 |
Q |
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| T |
38447256 |
atataaaagagaatggcattgcataatcaactcacctatcaatca |
38447212 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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