View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21532_low_1 (Length: 622)

Name: NF21532_low_1
Description: NF21532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21532_low_1
NF21532_low_1
[»] scaffold2079 (1 HSPs)
scaffold2079 (15-319)||(96-396)
[»] chr7 (2 HSPs)
chr7 (66-318)||(6241962-6242208)
chr7 (15-48)||(6241912-6241945)
[»] chr2 (8 HSPs)
chr2 (69-136)||(15641840-15641907)
chr2 (183-222)||(10850715-10850754)
chr2 (183-222)||(10878229-10878268)
chr2 (83-133)||(15622006-15622057)
chr2 (83-133)||(15643846-15643897)
chr2 (83-133)||(15652896-15652947)
chr2 (548-606)||(36807251-36807309)
chr2 (66-136)||(43724873-43724943)
[»] chr3 (1 HSPs)
chr3 (184-222)||(16724110-16724148)
[»] chr1 (1 HSPs)
chr1 (72-136)||(10682669-10682732)


Alignment Details
Target: scaffold2079 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: scaffold2079
Description:

Target: scaffold2079; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 15 - 319
Target Start/End: Original strand, 96 - 396
Alignment:
Q  15 agatgaagaagaagttgagtagaagataaaagagnnnnnnnnnccattcggtgtagcaaatcaattttgtaggaaaacctctttgaagctaggagaaaga 114  Q
    |||||||||||||||| |||||||||||||||||           || |||||||||||||||||||||||||||||||||||||||| | |||||||||    
T  96 agatgaagaagaagttaagtagaagataaaagagaaaaaaaa---atccggtgtagcaaatcaattttgtaggaaaacctctttgaagtttggagaaaga 192  T
Q  115 gatagtctcttgcaaaataacatcgatnnnnnnnngtgaatataaaagaatattttggaacgcagacactacttttttgcaatattaagatagcctacta 214  Q
     |||||||||||||||||||||| |||         ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  193 aatagtctcttgcaaaataacatggataaaaaaaa-tgaatataaaagaatattttggaacgcaggcactacttttttgcaatattaagatagcctacta 291  T
Q  215 tacttaatcgggtagaatttttctcatattgcgtaccccgaatccgcccataggtgaccaacataaattgcaaattatgggactatcctcaaatgcacaa 314  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |||||||||||||    
T  292 tacttaatcgggtagaatttttctcatattgcgtaccccgaatccgcccataggtgaccaacatgaattgcaaattatgcgactatgctcaaatgcacaa 391  T
Q  315 gttgg 319  Q
    |||||    
T  392 gttgg 396  T

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Target: chr7 (Bit Score: 108; Significance: 6e-54; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 66 - 318
Target Start/End: Original strand, 6241962 - 6242208
Alignment:
Q  66 tgtagcaaatcaattttgtaggaaaacctctttgaagctaggagaaagagatagtctcttgcaaaataacatcgat-nnnnnnnngtgaatataaaagaa 164  Q
    ||||||||||||||||| || |||||||||||||||| | ||||||||||||||||||||||||||||| | ||||         |||||| ||||||||    
T  6241962 tgtagcaaatcaattttttaagaaaacctctttgaagtttggagaaagagatagtctcttgcaaaataataacgataaaaaaaaagtgaatgtaaaagaa 6242061  T
Q  165 tattttggaacgcagacactacttttttgcaatattaagatagcctactatacttaatcgggtagaatttttctcatattgcgtaccccgaatccgccca 264  Q
    ||||||| ||||  | ||||||||||||||||||||||| ||| ||||||||||||| ||||       |||||||||||||||||| |||||||| |||    
T  6242062 tattttgaaacgtgggcactacttttttgcaatattaagttagtctactatacttaaccggg-------tttctcatattgcgtaccgcgaatccgtcca 6242154  T
Q  265 taggtgaccaacataaattgcaaattatgggactatcctcaaatgcacaagttg 318  Q
    || |||| |||||| |||||||||||||| |||||| |||||||| ||||||||    
T  6242155 tacgtgatcaacatgaattgcaaattatgtgactatgctcaaatgaacaagttg 6242208  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 48
Target Start/End: Original strand, 6241912 - 6241945
Alignment:
Q  15 agatgaagaagaagttgagtagaagataaaagag 48  Q
    |||||||||||||||| |||||||||||||||||    
T  6241912 agatgaagaagaagttaagtagaagataaaagag 6241945  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000006; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 69 - 136
Target Start/End: Original strand, 15641840 - 15641907
Alignment:
Q  69 agcaaatcaattttgtaggaaaacctctttgaagctaggagaaagagatagtctcttgcaaaataaca 136  Q
    ||||||| |||| ||||||||||| ||||||||||| |||| ||||||  | ||||||||||||||||    
T  15641840 agcaaataaattctgtaggaaaacatctttgaagcttggaggaagagaacgcctcttgcaaaataaca 15641907  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 183 - 222
Target Start/End: Complemental strand, 10850754 - 10850715
Alignment:
Q  183 ctacttttttgcaatattaagatagcctactatacttaat 222  Q
    |||| ||||||||||||||||||||| |||||||||||||    
T  10850754 ctacctttttgcaatattaagatagcttactatacttaat 10850715  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 183 - 222
Target Start/End: Complemental strand, 10878268 - 10878229
Alignment:
Q  183 ctacttttttgcaatattaagatagcctactatacttaat 222  Q
    |||| ||||||||||||||||||||| |||||||||||||    
T  10878268 ctacctttttgcaatattaagatagcttactatacttaat 10878229  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 83 - 133
Target Start/End: Original strand, 15622006 - 15622057
Alignment:
Q  83 gtaggaaaacctctttgaagctaggagaaagagata-gtctcttgcaaaata 133  Q
    |||||||||||||||||||||| |||| |||||| | |||||||||||||||    
T  15622006 gtaggaaaacctctttgaagcttggaggaagagaaacgtctcttgcaaaata 15622057  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 83 - 133
Target Start/End: Original strand, 15643846 - 15643897
Alignment:
Q  83 gtaggaaaacctctttgaagctaggagaaagagata-gtctcttgcaaaata 133  Q
    |||||||||||||||||||||| |||| |||||| | |||||||||||||||    
T  15643846 gtaggaaaacctctttgaagcttggaggaagagaaacgtctcttgcaaaata 15643897  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 83 - 133
Target Start/End: Original strand, 15652896 - 15652947
Alignment:
Q  83 gtaggaaaacctctttgaagctaggagaaagagata-gtctcttgcaaaata 133  Q
    |||||||||||||||||||||| |||| |||||| | |||||||||||||||    
T  15652896 gtaggaaaacctctttgaagcttggaggaagagaaacgtctcttgcaaaata 15652947  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 548 - 606
Target Start/End: Complemental strand, 36807309 - 36807251
Alignment:
Q  548 tgtaaaggctatatattagccattttgctttaataaaggatattcagttttgcaaacct 606  Q
    |||||| | ||||||||||||| ||||||||||||||| |||  |||||| ||||||||    
T  36807309 tgtaaatgttatatattagccactttgctttaataaagaatacccagtttcgcaaacct 36807251  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 66 - 136
Target Start/End: Complemental strand, 43724943 - 43724873
Alignment:
Q  66 tgtagcaaatcaattttgtaggaaaacctctttgaagctaggagaaagagatagtctcttgcaaaataaca 136  Q
    |||||||||| | |||||  ||||||||| ||| ||| | |||||||||||  ||||||||||||||||||    
T  43724943 tgtagcaaataatttttgcgggaaaacctatttaaagtttggagaaagagaacgtctcttgcaaaataaca 43724873  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 184 - 222
Target Start/End: Original strand, 16724110 - 16724148
Alignment:
Q  184 tacttttttgcaatattaagatagcctactatacttaat 222  Q
    ||||||||||||||||||||||||  |||||||||||||    
T  16724110 tacttttttgcaatattaagatagtttactatacttaat 16724148  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 72 - 136
Target Start/End: Complemental strand, 10682732 - 10682669
Alignment:
Q  72 aaatcaattttgtaggaaaacctctttgaagctaggagaaagagatagtctcttgcaaaataaca 136  Q
    |||| |||||||||| |||| |||||||||||| |||||||||||   | |||||||||||||||    
T  10682732 aaataaattttgtag-aaaatctctttgaagcttggagaaagagaacatgtcttgcaaaataaca 10682669  T

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