View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21532_low_11 (Length: 309)
Name: NF21532_low_11
Description: NF21532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21532_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 20 - 303
Target Start/End: Original strand, 278471 - 278757
Alignment:
| Q |
20 |
cagaaggcccatgaatcttctaaatgtttcccttactactg---ttttttatttcttctttccaactgatatgcatttccttttccatcacggtttatgg |
116 |
Q |
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| T |
278471 |
cagaaggcccatgaatcttctaaatgtctcccttactactgctgttttttatttcttctttccaactgatatgcatttccttttccaccacggtttatgg |
278570 |
T |
|
| Q |
117 |
tttggattttgattttctgaaattttccgtgtcatttgatattataggtcccaaagaacaagaggaatgttaaatgtaggaagatgattaggtgtgcttc |
216 |
Q |
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|||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
278571 |
tttggattttgattttctgaaattctccttgtcatttgatattataggtcccaaagaacaagaggaatgttaaatgtaggaagatgattaggtgtgcttc |
278670 |
T |
|
| Q |
217 |
tataagcactgaagagaatacaagtactggttctcaggatcagaacttaagcggttattgttcagaggatgagtccaattcttctca |
303 |
Q |
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| T |
278671 |
tataagcactgaagagaatacaagtactggttctcaggatcagaccttaagcggttattgttcagaggatgagtccaattcttctca |
278757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 6e-31; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 151 - 299
Target Start/End: Complemental strand, 24653551 - 24653403
Alignment:
| Q |
151 |
tttgatattataggtcccaaagaacaagaggaatgttaaatgtaggaagatgattaggtgtgcttctataagcactgaagagaatacaagtactggttct |
250 |
Q |
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|||||| |||||||||| |||||| |||||||||||||||||||||||| || || |||| |||| |||||||| ||||||||||||| |||||||| |
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| T |
24653551 |
tttgattttataggtccgaaagaaagagaggaatgttaaatgtaggaagaacatgagatgtggttctgtaagcacttgagagaatacaagtcctggttct |
24653452 |
T |
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| Q |
251 |
caggatcagaacttaagcggttattgttcagaggatgagtccaattctt |
299 |
Q |
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| T |
24653451 |
caggatcagaccttaagcaattgttgttcagataatgaatccaattctt |
24653403 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 150 - 268
Target Start/End: Complemental strand, 24685277 - 24685159
Alignment:
| Q |
150 |
atttgatattataggtcccaaagaacaagaggaatgttaaatgtaggaagatgattaggtgtgcttctataagcactgaagagaatacaagtactggttc |
249 |
Q |
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||||||| ||||||||||| ||||||||||||||||||||||| | ||||| || || |||| || ||||||||| |||||||||||| || ||||||| |
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| T |
24685277 |
atttgattttataggtccccaagaacaagaggaatgttaaatgcatgaagaatatgagatgtggttttataagcacagaagagaatacaggtcctggttc |
24685178 |
T |
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| Q |
250 |
tcaggatcagaacttaagc |
268 |
Q |
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||| ||||||| ||||||| |
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| T |
24685177 |
tcaagatcagaccttaagc |
24685159 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 151 - 260
Target Start/End: Complemental strand, 24682535 - 24682423
Alignment:
| Q |
151 |
tttgatattataggtcccaaagaacaagaggaat---gttaaatgtaggaagatgattaggtgtgcttctataagcactgaagagaatacaagtactggt |
247 |
Q |
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| T |
24682535 |
tttgattttataggtccgaaagaaagagaggaataatgttaaatgtaggaagaacatgagatgtggttctgtaagcacttaagagaatacaagtgctggt |
24682436 |
T |
|
| Q |
248 |
tctcaggatcaga |
260 |
Q |
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||||||||||||| |
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| T |
24682435 |
tctcaggatcaga |
24682423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 68 - 267
Target Start/End: Complemental strand, 24631957 - 24631760
Alignment:
| Q |
68 |
tttcttct-ttccaactgatatgcatttccttttccatcacggtttatggtttggattttgattttctgaaattttccgtgtcatttgatattataggtc |
166 |
Q |
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| T |
24631957 |
tttcttctcttccaagtgatatggatttctttttccaacacaatttatggtctgt-tttcgattttgtgagattatcccggttatttgattttattagtc |
24631859 |
T |
|
| Q |
167 |
ccaaagaacaagaggaatgttaaatgtaggaagatgattaggtgtgcttctataagcactgaagagaatacaagtactggttctcaggatcagaacttaa |
266 |
Q |
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| T |
24631858 |
ccaaagaacaagaggaa--ttaaatgtatgaagaatatgagatttggttctataatcacaaaagaaaatacaagtcctggttcgccggatcagaccttaa |
24631761 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 5e-19; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 87 - 259
Target Start/End: Complemental strand, 41806256 - 41806086
Alignment:
| Q |
87 |
atgcatttccttttccatcacggtttatggtttggattttgattttctgaaattttccgtgtcatttgatattataggtcccaaagaacaagaggaatgt |
186 |
Q |
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|||||||||||||||| || |||||||||||| ||| |||||| ||| ||| ||| ||| ||||||| ||||||||||| ||||||||| ||||| |
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| T |
41806256 |
atgcatttccttttcctgcaaagtttatggtttgtgttt-gattttgtgagattctccttgttatttgattttataggtcccgcggaacaagag-aatgt |
41806159 |
T |
|
| Q |
187 |
taaatgtaggaagatgattaggtgtgcttctataagcactgaagagaatacaagtactggttctcaggatcag |
259 |
Q |
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||| ||||| |||| | || | ||||||||||||||||||||||||||| || ||||||||||| ||||| |
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| T |
41806158 |
taactgtagaaagaatgtaagacgggcttctataagcactgaagagaatacacgtcctggttctcagcatcag |
41806086 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 209 - 260
Target Start/End: Complemental strand, 41800031 - 41799980
Alignment:
| Q |
209 |
tgtgcttctataagcactgaagagaatacaagtactggttctcaggatcaga |
260 |
Q |
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| T |
41800031 |
tgtgcttctataagcactgaagaaaatacaagtcctggttctcaggatcaga |
41799980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 83 - 186
Target Start/End: Complemental strand, 41800138 - 41800036
Alignment:
| Q |
83 |
tgatatgcatttccttttccatcacggtttatggtttggattttgattttctgaaattttccgtgtcatttgatattataggtcccaaagaacaagagga |
182 |
Q |
| |
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|||| ||||||||||||||| ||| |||||||||||| ||| |||||| | | ||| ||| || ||||||| ||||||||||| ||||||||| ||| |
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| T |
41800138 |
tgatgtgcatttccttttcctgcacagtttatggtttgtgttt-gattttgttagattctcctggttatttgattttataggtcccgaagaacaagggga |
41800040 |
T |
|
| Q |
183 |
atgt |
186 |
Q |
| |
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|||| |
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|
| T |
41800039 |
atgt |
41800036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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