View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21532_low_12 (Length: 286)
Name: NF21532_low_12
Description: NF21532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21532_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 4425045 - 4425327
Alignment:
| Q |
1 |
agggaggacaaatcatgtagtagtagaatatgaagttcaaaaaacctttctcacagttttagaaggagtgaagaacagagtataagagcaagaaacaaag |
100 |
Q |
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| T |
4425045 |
agggaggacaaatcatgtagtagtagaatatgaagttcaaaaaacctttctcacagttttagaaggagtgaagaacagagtgtaagagcaagaaacaaag |
4425144 |
T |
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| Q |
101 |
tagcaaatttaaaagactaa---------------atattaatgtatcagaagnnnnnnnttgggatactttctttcacagcttttctcccgcccacaaa |
185 |
Q |
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|||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
4425145 |
tagcaaatttaaaagactaagatttcaaagactaaatattaatgtatcagaagaaaaaaattgggatactttctttcacagcttttctcccgcccacaaa |
4425244 |
T |
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| Q |
186 |
aaccttccacatggttatgcatcactttaaagtaatagatcaatcaattttaagcaaaataggctagaattctagggtatcgg |
268 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4425245 |
aaccttccacatggttatgcatcactttaaagtaatagatcaatcaattttaagcaaaataggctagaattctagggtatcgg |
4425327 |
T |
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