View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21532_low_14 (Length: 251)
Name: NF21532_low_14
Description: NF21532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21532_low_14 |
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| [»] chr5 (2 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 53 - 251
Target Start/End: Original strand, 1091323 - 1091521
Alignment:
| Q |
53 |
ttgagcaacatgtcttttttctaaaattctacggctattttaaaacataaaaaatatagaacctaagtgaccaaatgactcattaattgagtacaagcat |
152 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1091323 |
ttgagcaacatgtcttttttctaaaattctacggcttttttaaaacataaaaaatatagaacctaagtgaccaaatgactcattaattgagtacaagcat |
1091422 |
T |
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| Q |
153 |
aataagatccaacatttaattctcaatacatgccaaatcataactttaatctacaaataagatcaataattctcaagcgaagatacaaaaataacaata |
251 |
Q |
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| T |
1091423 |
aataagatgcaacatttaattctcaatacatgccaaatcataacttcaatctacaaataagatcaataattctcaagcgaagatacaaaaataacaata |
1091521 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 56 - 251
Target Start/End: Original strand, 36523952 - 36524140
Alignment:
| Q |
56 |
agcaacatgtcttttttctaaaattctacggctattttaaaacataaaaaatatagaacctaagtgaccaaatgactcattaattgagtacaagcataat |
155 |
Q |
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| T |
36523952 |
agcaacatgtcttttttctaaaattctacggct-ttttaaaa------aaatatagaacctaagtgaccaaatgactcattaattgagtacaagcataat |
36524044 |
T |
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| Q |
156 |
aagatccaacatttaattctcaatacatgccaaatcataactttaatctacaaataagatcaataattctcaagcgaagatacaaaaataacaata |
251 |
Q |
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| T |
36524045 |
aagatccaacatttaattctcaatacatgccaaatcagaacttcaatcaacaaataagataaataattctcaaccgaagatacaaaaataacaata |
36524140 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 127 - 251
Target Start/End: Complemental strand, 12820938 - 12820814
Alignment:
| Q |
127 |
atgactcattaattgagtacaagcataataagatccaacatttaattctcaatacatgccaaatcataactttaatctacaaataagatcaataattctc |
226 |
Q |
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||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |||||||| |||||||| | |||||||||||||||||||||| |
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| T |
12820938 |
atgactcattaattgagcacaaacataataagatccaacatttaattctcaatacataccaaatcagaactttaaccaacaaataagatcaataattctc |
12820839 |
T |
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| Q |
227 |
aagcgaagatacaaaaataacaata |
251 |
Q |
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| T |
12820838 |
aaacgaagatacaagagtaacaata |
12820814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 84; Significance: 5e-40; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 53 - 177
Target Start/End: Original strand, 18099999 - 18100125
Alignment:
| Q |
53 |
ttgagcaacatgtcttttttctaaaattctacggctattttaaaacata--aaaaatatagaacctaagtgaccaaatgactcattaattgagtacaagc |
150 |
Q |
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||||| |||||||||||||||||||||| ||||||| || ||||||||| ||||||||| ||||||||||||||||| |||||| |||||||||||||| |
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| T |
18099999 |
ttgaggaacatgtcttttttctaaaattatacggcttttataaaacatataaaaaatataaaacctaagtgaccaaataactcatgaattgagtacaagc |
18100098 |
T |
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| Q |
151 |
ataataagatccaacatttaattctca |
177 |
Q |
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| T |
18100099 |
ataataagatccaacattcaattctca |
18100125 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 53 - 177
Target Start/End: Original strand, 18095702 - 18095828
Alignment:
| Q |
53 |
ttgagcaacatgtcttttttctaaaattctacggctattttaaaacata--aaaaatatagaacctaagtgaccaaatgactcattaattgagtacaagc |
150 |
Q |
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||||| |||||||||||||||||||||| |||| || || ||||||||| ||||||||| ||||||||||||||||| |||||| |||||||||||||| |
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| T |
18095702 |
ttgaggaacatgtcttttttctaaaattatacgacttttataaaacatataaaaaatataaaacctaagtgaccaaataactcatgaattgagtacaagc |
18095801 |
T |
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| Q |
151 |
ataataagatccaacatttaattctca |
177 |
Q |
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| T |
18095802 |
ataataagatccaacattcaattctca |
18095828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 205 - 251
Target Start/End: Original strand, 18095841 - 18095887
Alignment:
| Q |
205 |
acaaataagatcaataattctcaagcgaagatacaaaaataacaata |
251 |
Q |
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| T |
18095841 |
acaaataagatcaataattctcagccgaagatacaaaaataacaata |
18095887 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 205 - 251
Target Start/End: Original strand, 18100138 - 18100184
Alignment:
| Q |
205 |
acaaataagatcaataattctcaagcgaagatacaaaaataacaata |
251 |
Q |
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| T |
18100138 |
acaaataagatcaataattctcagccgaagatacaaaaataacaata |
18100184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 109 - 251
Target Start/End: Complemental strand, 7709089 - 7708942
Alignment:
| Q |
109 |
tagaacctaagtgaccaaatgactcattaa-ttgagtacaagcataataagatccaacatttaattctcaatacatgccaaatcataactttaatctac- |
206 |
Q |
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|||||||||| ||||||||| ||||||||| |||||| || | |||| ||||||||||| ||| |||||||| || ||||||||||||||||| || |
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| T |
7709089 |
tagaacctaactgaccaaataactcattaaattgagttcatgtctaattagatccaacatgtaactctcaatatatatcaaatcataactttaataaaca |
7708990 |
T |
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| Q |
207 |
---aaataagatcaataattctcaagcgaagatacaaaaataacaata |
251 |
Q |
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|||| || |||||||||||||| | ||||||| |||||||||||| |
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| T |
7708989 |
gataaattagttcaataattctcaaacaaagatacgaaaataacaata |
7708942 |
T |
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