View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21532_low_15 (Length: 251)

Name: NF21532_low_15
Description: NF21532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21532_low_15
NF21532_low_15
[»] chr2 (2 HSPs)
chr2 (10-232)||(32263386-32263609)
chr2 (151-218)||(34413563-34413629)
[»] chr6 (3 HSPs)
chr6 (10-232)||(24963234-24963456)
chr6 (10-129)||(20412988-20413107)
chr6 (124-218)||(20413075-20413169)
[»] chr3 (2 HSPs)
chr3 (10-232)||(23927612-23927834)
chr3 (10-232)||(23934746-23934992)
[»] scaffold0383 (1 HSPs)
scaffold0383 (10-232)||(13560-13770)
[»] chr5 (2 HSPs)
chr5 (10-131)||(27360702-27360823)
chr5 (139-232)||(27360804-27360897)
[»] scaffold0820 (1 HSPs)
scaffold0820 (123-218)||(4146-4241)
[»] chr8 (2 HSPs)
chr8 (10-108)||(22241532-22241630)
chr8 (139-218)||(22241464-22241543)
[»] chr1 (2 HSPs)
chr1 (166-209)||(29082322-29082365)
chr1 (160-210)||(29085245-29085295)


Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 10 - 232
Target Start/End: Original strand, 32263386 - 32263609
Alignment:
Q  10 agaagaagagaaaaagccatgctaaaaatgtagttgccttcatgcatggagacaagtaataaagtagtgtcataaaa-tgtgttagggtgaatagtgtta 108  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||    
T  32263386 agaagaagagaaaaagccatgctgaaaatgtagttgccttcatgcatggagacaagtaataaagcagtgtcataaaaatgtgtaagggtgaatagtgtta 32263485  T
Q  109 gagtgaatagtactatgaatagtactatgatgaatagtgctgtgaatagtgttatgtatgaatagtagtagagccttttggcttataaataaaggcttgt 208  Q
    ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32263486 gagtgaatagtgctatgaatagtactatgatgaatagtgctatgaatagtgttatgtatgaatagtagtagagccttttggcttataaataaaggcttgt 32263585  T
Q  209 aacgagagtaaggcaagttgtagt 232  Q
    ||||||||||||| ||| ||||||    
T  32263586 aacgagagtaagggaagctgtagt 32263609  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 151 - 218
Target Start/End: Complemental strand, 34413629 - 34413563
Alignment:
Q  151 tgaatagtgttatgtatgaatagtagtagagccttttggcttataaataaaggcttgtaacgagagta 218  Q
    |||||||| |||||||||||||||||||| | ||||| | |||||||||| ||||||| |||||||||    
T  34413629 tgaatagtattatgtatgaatagtagtagggtcttttagattataaataagggcttgt-acgagagta 34413563  T

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Target: chr6 (Bit Score: 152; Significance: 1e-80; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 10 - 232
Target Start/End: Original strand, 24963234 - 24963456
Alignment:
Q  10 agaagaagagaaaaagccatgctaaaaatgtagttgccttcatgcatggagacaagtaataaagtagtgtcataaaa-tgtgttagggtgaatagtgtta 108  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||| ||||||||||||||||    
T  24963234 agaagaagagaaaaagccatgctgaaaatgtagttgccttcatgcatggagacaagtaataa-gtagtgtcataaaaatatgtaagggtgaatagtgtta 24963332  T
Q  109 gagtgaatagtactatgaatagtactatgatgaatagtgctgtgaatagtgttatgtatgaatagtagtagagccttttggcttataaataaaggcttgt 208  Q
    |  |||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||    
T  24963333 ggatgaatagtactatgaatagtgctatgatgaatagtactatgaatagtgttatgtatgaatagtagtagggccttttggcttataaataatggcttgt 24963432  T
Q  209 aacgagagtaaggcaagttgtagt 232  Q
    ||||| ||||  ||||| ||||||    
T  24963433 aacgatagtagtgcaagctgtagt 24963456  T

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Target: chr6; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 10 - 129
Target Start/End: Original strand, 20412988 - 20413107
Alignment:
Q  10 agaagaagagaaaaagccatgctaaaaatgtagttgccttcatgcatggagacaagtaataaagtagtgtcataaaa-tgtgttagggtgaatagtgtta 108  Q
    |||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| | ||| ||||||||||||| ||    
T  20412988 agaagaagagaaaaagtcatgctgaaaatgtagttgccttcatgcatggagacaagtaat-aagtagtgtcataaaattatgtaagggtgaatagtgcta 20413086  T
Q  109 gagtgaatagtactatgaata 129  Q
       |||||||| |||||||||    
T  20413087 tgatgaatagtgctatgaata 20413107  T

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Target: chr6; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 124 - 218
Target Start/End: Original strand, 20413075 - 20413169
Alignment:
Q  124 tgaatagtactatgatgaatagtgctgtgaatagtgttatgtatgaatagtagtagagccttttggcttataaataaaggcttgtaacgagagta 218  Q
    |||||||| ||||||||||||||||| |||||| |||||||||||||||||||||| |||||||||||||||| ||| |||||||||||| ||||    
T  20413075 tgaatagtgctatgatgaatagtgctatgaataatgttatgtatgaatagtagtagggccttttggcttataagtaagggcttgtaacgatagta 20413169  T

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Target: chr3 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 10 - 232
Target Start/End: Complemental strand, 23927834 - 23927612
Alignment:
Q  10 agaagaagagaaaaagccatgctaaaaatgtagttgccttcatgcatggagacaagtaataaagtagtgtcataaaa-tgtgttagggtgaatagtgtta 108  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||| ||||||||||||||||    
T  23927834 agaagaagagaaaaagccatgctgaaaatgtagttgccttcatgcatggagacaagtaataa-gtagtgtcataaaaatatgtaagggtgaatagtgtta 23927736  T
Q  109 gagtgaatagtactatgaatagtactatgatgaatagtgctgtgaatagtgttatgtatgaatagtagtagagccttttggcttataaataaaggcttgt 208  Q
    |  |||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||    
T  23927735 ggatgaatagtactatgaatagtgctatgatgaatagtactatgaatagtgttatgtatgaatagtagtagggccttttggcttataaataatggcttgt 23927636  T
Q  209 aacgagagtaaggcaagttgtagt 232  Q
    ||||| ||||  ||||| ||||||    
T  23927635 aacgatagtagtgcaagctgtagt 23927612  T

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Target: chr3; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 10 - 232
Target Start/End: Original strand, 23934746 - 23934992
Alignment:
Q  10 agaagaagagaaaaagccatgctaaaaatgtagttgccttcatgcatggagacaagtaataaagtagtgtcataaaa-tgtgttagggtgaatagtgtta 108  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||||| | ||| ||||||||||||||||    
T  23934746 agaagaagagaaaaagccatgctgaaaatgtagttgccttcatgcatggagacaagtaataaa-tagtgccataaaattatgtaagggtgaatagtgtta 23934844  T
Q  109 gagtgaatagtact---atgaatagtactatgatgaatagtgctgtg-------------aatagtg--------ttatgtatgaatagtagtagagcct 184  Q
    |  |||||||| ||   ||||||||| ||||||||||||||| ||||             |||||||        |||||||||||||||||||| | ||    
T  23934845 ggatgaatagtgctatgatgaatagtgctatgatgaatagtgttgtggagacaagtaataaatagtgtcataaaattatgtatgaatagtagtagggtct 23934944  T
Q  185 tttggcttataaataaaggcttgtaacgagagtaaggcaagttgtagt 232  Q
    ||||||||||||||||||||||||||||| ||||  ||||| ||||||    
T  23934945 tttggcttataaataaaggcttgtaacgatagtagtgcaagctgtagt 23934992  T

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Target: scaffold0383 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: scaffold0383
Description:

Target: scaffold0383; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 10 - 232
Target Start/End: Complemental strand, 13770 - 13560
Alignment:
Q  10 agaagaagagaaaaagccatgctaaaaatgtagttgccttcatgcatggagacaagtaataaagtagtgtcat-aaaatgtgttagggtgaatagtgtta 108  Q
    ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||| ||||||||||||||||    
T  13770 agaagaacagaaaaagccatgctgaaaatgtagttgccttcatgcatggagacaagtaat-aagtagtgtcataaaaatatgtaagggtgaatagtgtta 13672  T
Q  109 gagtgaatagtactatgaatagtactatgatgaatagtgctgtgaatagtgttatgtatgaatagtagtagagccttttggcttataaataaaggcttgt 208  Q
    |  |||||||||||||||||||| ||||||            |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  13671 ggatgaatagtactatgaatagtgctatga------------tgaatagtgttatgtatgaatagtggtagggccttttggcttataaataaaggcttgt 13584  T
Q  209 aacgagagtaaggcaagttgtagt 232  Q
    ||||| ||||  ||||| ||||||    
T  13583 aacgatagtagtgcaagctgtagt 13560  T

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Target: chr5 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 10 - 131
Target Start/End: Original strand, 27360702 - 27360823
Alignment:
Q  10 agaagaagagaaaaagccatgctaaaaatgtagttgccttcatgcatggagacaagtaataaagtagtgtcataa-aatgtgttagggtgaatagtgtta 108  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||| || ||||| ||||||||||| | | ||| ||||||||||||||||    
T  27360702 agaagaagagaaaaagccatgctgaaaatgtagttgccttcatgcatggagacatgtcataaa-tagtgtcataagattatgtaagggtgaatagtgtta 27360800  T
Q  109 gagtgaatagtactatgaatagt 131  Q
    | ||||||||| |||||||||||    
T  27360801 gggtgaatagtgctatgaatagt 27360823  T

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Target: chr5; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 139 - 232
Target Start/End: Original strand, 27360804 - 27360897
Alignment:
Q  139 tgaatagtgctgtgaatagtgttatgtatgaatagtagtagagccttttggcttataaataaaggcttgtaacgagagtaaggcaagttgtagt 232  Q
    ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||  ||||| ||||||    
T  27360804 tgaatagtgctatgaatagtgttatgtatgaatagtagtagggccttttggcttataaataaaggcttgtaacgatagtagtgcaagctgtagt 27360897  T

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Target: scaffold0820 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: scaffold0820
Description:

Target: scaffold0820; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 123 - 218
Target Start/End: Complemental strand, 4241 - 4146
Alignment:
Q  123 atgaatagtactatgatgaatagtgctgtgaatagtgttatgtatgaatagtagtagagccttttggcttataaataaaggcttgtaacgagagta 218  Q
    ||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||  |||||||||||||||||||||||||||||||| ||||    
T  4241 atgaatagtgctataatgaatagtgctgtgaataatgttatgtatgaatagtagtaggaccttttggcttataaataaaggcttgtaacgatagta 4146  T

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Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 10 - 108
Target Start/End: Complemental strand, 22241630 - 22241532
Alignment:
Q  10 agaagaagagaaaaagccatgctaaaaatgtagttgccttcatgcatggagacaagtaataaagtagtgtcataaaa-tgtgttagggtgaatagtgtta 108  Q
    |||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| | ||| ||||||||||||||||    
T  22241630 agaagaagagaaaaagacatgctgaaaatgtagttgccttcatgcatggagacaagtaat-aagtagtgtcataaaattatgtaagggtgaatagtgtta 22241532  T

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Target: chr8; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 139 - 218
Target Start/End: Complemental strand, 22241543 - 22241464
Alignment:
Q  139 tgaatagtgctgtgaatagtgttatgtatgaatagtagtagagccttttggcttataaataaaggcttgtaacgagagta 218  Q
    ||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||    
T  22241543 tgaatagtgttatgaatagtgttatgtatgaatagtattagagccttttggcttataaataaaggcttgtaacgatagta 22241464  T

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Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 166 - 209
Target Start/End: Original strand, 29082322 - 29082365
Alignment:
Q  166 atgaatagtagtagagccttttggcttataaataaaggcttgta 209  Q
    ||||||||||||||||||||||| ||||||||||||||||||||    
T  29082322 atgaatagtagtagagccttttgacttataaataaaggcttgta 29082365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 160 - 210
Target Start/End: Complemental strand, 29085295 - 29085245
Alignment:
Q  160 ttatgtatgaatagtagtagagccttttggcttataaataaaggcttgtaa 210  Q
    ||||| ||||||||||||||  ||||||| |||||||||||||||||||||    
T  29085295 ttatggatgaatagtagtaggaccttttgacttataaataaaggcttgtaa 29085245  T

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