View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21532_low_18 (Length: 248)

Name: NF21532_low_18
Description: NF21532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21532_low_18
NF21532_low_18
[»] chr3 (4 HSPs)
chr3 (1-241)||(47763913-47764146)
chr3 (168-214)||(53351960-53352006)
chr3 (141-177)||(24761961-24761997)
chr3 (141-177)||(24815937-24815973)
[»] chr8 (4 HSPs)
chr8 (137-241)||(5662584-5662688)
chr8 (2-125)||(9885367-9885485)
chr8 (2-96)||(4969966-4970060)
chr8 (142-241)||(8158484-8158583)
[»] chr1 (4 HSPs)
chr1 (1-101)||(52945876-52945976)
chr1 (1-101)||(52938244-52938344)
chr1 (3-96)||(44513261-44513354)
chr1 (142-241)||(25223242-25223342)
[»] chr7 (2 HSPs)
chr7 (1-96)||(2439988-2440083)
chr7 (142-177)||(26910044-26910079)
[»] chr5 (2 HSPs)
chr5 (142-237)||(22004459-22004554)
chr5 (142-241)||(30463049-30463149)
[»] chr2 (3 HSPs)
chr2 (142-241)||(24454538-24454637)
chr2 (2-96)||(27534888-27534982)
chr2 (181-241)||(997882-997942)
[»] chr4 (1 HSPs)
chr4 (149-194)||(38014371-38014415)


Alignment Details
Target: chr3 (Bit Score: 178; Significance: 4e-96; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 47764146 - 47763913
Alignment:
Q  1 acactatctttatcaccgtactaatgacttactgctatgaagacttatacaaatttctatattatttttagtttctacaatttatatgacccgtgccccg 100  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||       
T  47764146 acactatctttattaccgtactaatgacttactgctatgaagacttatacaaatttctatattatttttaatttctacaatctatatgacccgtgcct-- 47764049  T
Q  101 cgaggcacgggtcggcgttctagtttatatttaatccctacttaacattgctaataactttgcaaaacctaaacctagaatttttaggcgccaatcaagg 200  Q
        |||||||  ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  47764048 ----gcacgggagggcgttctagtttatatctaatcc-tacttaacattgctaataactttgcaaaacctaaatctagaatttttaggcgccaatcaagg 47763954  T
Q  201 aggtccgttggatcaaatcatctggctaggcattcatctca 241  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  47763953 aggtccgttggatcaaatcatctggctaggcattcatctca 47763913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 214
Target Start/End: Complemental strand, 53352006 - 53351960
Alignment:
Q  168 cctaaacctagaatttttaggcgccaatcaaggaggtccgttggatc 214  Q
    ||||||||||||   |||||||||||||||||| |||||||||||||    
T  53352006 cctaaacctagatagtttaggcgccaatcaaggtggtccgttggatc 53351960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 177
Target Start/End: Complemental strand, 24761997 - 24761961
Alignment:
Q  141 cttaacattgctaataactttgcaaaacctaaaccta 177  Q
    ||||||||||||||| |||||||||| ||||||||||    
T  24761997 cttaacattgctaatgactttgcaaaccctaaaccta 24761961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 177
Target Start/End: Original strand, 24815937 - 24815973
Alignment:
Q  141 cttaacattgctaataactttgcaaaacctaaaccta 177  Q
    ||||||||||||||| |||||||||| ||||||||||    
T  24815937 cttaacattgctaatgactttgcaaaccctaaaccta 24815973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 4e-31; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 137 - 241
Target Start/End: Original strand, 5662584 - 5662688
Alignment:
Q  137 cctacttaacattgctaataactttgcaaaacctaaacctagaatttttaggcgccaatcaaggaggtccgttggatcaaatcatctggctaggcattca 236  Q
    |||| |||| ||||||||| |||||||||| |||||||||||| ||||||||||||||||||||||||||||| ||||  ||||| ||||||||||||||    
T  5662584 cctaattaatattgctaatgactttgcaaaccctaaacctagattttttaggcgccaatcaaggaggtccgttagatctcatcatttggctaggcattca 5662683  T
Q  237 tctca 241  Q
    |||||    
T  5662684 tctca 5662688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 2 - 125
Target Start/End: Complemental strand, 9885485 - 9885367
Alignment:
Q  2 cactatctttatcaccgtactaatgacttactgctatgaagacttatacaaatttctatattatttttagtttctacaatttatatgacccgtgccccgc 101  Q
    |||||||||||| || |||||||||||||| |||||||||||||| |||||||||| |||||||| |  |||| |||||| ||||||||||||     ||    
T  9885485 cactatctttattactgtactaatgacttattgctatgaagacttctacaaatttcaatattattgtcggtttgtacaatctatatgacccgt-----gc 9885391  T
Q  102 gaggcacgggtcggcgttctagtt 125  Q
    |  |||||||||||||||||||||    
T  9885390 ggcgcacgggtcggcgttctagtt 9885367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 2 - 96
Target Start/End: Original strand, 4969966 - 4970060
Alignment:
Q  2 cactatctttatcaccgtactaatgacttactgctatgaagacttatacaaatttctatattatttttagtttctacaatttatatgacccgtgc 96  Q
    |||||||||||| || |||||||||||||| |||||||||||||| |||||||||| |||||||| |  |||| |||||| ||||||||||||||    
T  4969966 cactatctttattactgtactaatgacttattgctatgaagacttctacaaatttcaatattattgtcggtttgtacaatctatatgacccgtgc 4970060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 241
Target Start/End: Original strand, 8158484 - 8158583
Alignment:
Q  142 ttaacattgctaataactttgcaaaacctaaacctagaatttttaggcgccaatcaaggaggtccgttggatcaaatcatctggctaggcattcatctca 241  Q
    |||||| ||||||| || ||||||||||||||||||    |||| ||||||||| ||| ||| ||||| |||||||| | || ||||  |||||||||||    
T  8158484 ttaacaatgctaattaccttgcaaaacctaaacctaagtattttgggcgccaattaagcagggccgtttgatcaaatgagctagctaatcattcatctca 8158583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 4e-31; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 52945876 - 52945976
Alignment:
Q  1 acactatctttatcaccgtactaatgacttactgctatgaagacttatacaaatttctatattatttttagtttctacaatttatatgacccgtgccccg 100  Q
    ||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||| |  ||||||||||| |||||||||||||| |||    
T  52945876 acactatctttattaccgtactaatgacttattgctatgaaggcttatacaaatttctatattattgtcggtttctacaatctatatgacccgtgcgccg 52945975  T
Q  101 c 101  Q
    |    
T  52945976 c 52945976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 52938244 - 52938344
Alignment:
Q  1 acactatctttatcaccgtactaatgacttactgctatgaagacttatacaaatttctatattatttttagtttctacaatttatatgacccgtgccccg 100  Q
    ||||||||||||| ||| ||||||||||||| |||||||||| ||||||||||||||||||||||| |  ||||||||||| |||||||||||||| |||    
T  52938244 acactatctttattaccatactaatgacttattgctatgaaggcttatacaaatttctatattattgtcggtttctacaatctatatgacccgtgcgccg 52938343  T
Q  101 c 101  Q
    |    
T  52938344 c 52938344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 3 - 96
Target Start/End: Original strand, 44513261 - 44513354
Alignment:
Q  3 actatctttatcaccgtactaatgacttactgctatgaagacttatacaaatttctatattatttttagtttctacaatttatatgacccgtgc 96  Q
    ||||||||||| ||||||||||||| ||| | ||| |||||| ||||||||||||||||||||| |||||||||||||| ||||||||||||||    
T  44513261 actatctttattaccgtactaatgatttatttctacgaagacatatacaaatttctatattattgttagtttctacaatctatatgacccgtgc 44513354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 241
Target Start/End: Original strand, 25223242 - 25223342
Alignment:
Q  142 ttaacattgctaataactttgcaaaacc-taaacctagaatttttaggcgccaatcaaggaggtccgttggatcaaatcatctggctaggcattcatctc 240  Q
    |||||| ||||||| || |||||||||| |||| ||||   |||| ||||||||| ||||||  ||||| |||||||| | || |||| |||||||||||    
T  25223242 ttaacaatgctaattaccttgcaaaaccctaaagctagccattttgggcgccaattaaggagagccgtttgatcaaatgagctagctaagcattcatctc 25223341  T
Q  241 a 241  Q
    |    
T  25223342 a 25223342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 2439988 - 2440083
Alignment:
Q  1 acactatctttatcaccgtactaatgacttactgctatgaagacttatacaaatttctatattatttttagtttctacaatttatatgacccgtgc 96  Q
    ||||||||||||| | ||||||||||||||| || |||||||||||||||| ||||||||| |||| |  ||||||||||| ||||||||||||||    
T  2439988 acactatctttattatcgtactaatgacttattgttatgaagacttatacatatttctataatattgtcggtttctacaatctatatgacccgtgc 2440083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 177
Target Start/End: Complemental strand, 26910079 - 26910044
Alignment:
Q  142 ttaacattgctaataactttgcaaaacctaaaccta 177  Q
    ||||||||||||||||||||||||| ||||||||||    
T  26910079 ttaacattgctaataactttgcaaaccctaaaccta 26910044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 142 - 237
Target Start/End: Complemental strand, 22004554 - 22004459
Alignment:
Q  142 ttaacattgctaataactttgcaaaacctaaacctagaatttttaggcgccaatcaaggaggtccgttggatcaaatcatctggctaggcattcat 237  Q
    |||||||||||||| | |||||||| ||||||||||||   |||||||||||||||||| |||||||||||||  ||||| |||||  ||||||||    
T  22004554 ttaacattgctaatgattttgcaaaccctaaacctagatagtttaggcgccaatcaaggtggtccgttggatctcatcatttggctcagcattcat 22004459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 241
Target Start/End: Complemental strand, 30463149 - 30463049
Alignment:
Q  142 ttaacattgctaataactttgcaaaacc-taaacctagaatttttaggcgccaatcaaggaggtccgttggatcaaatcatctggctaggcattcatctc 240  Q
    |||||| ||||||| || |||||||||| |||||||||   |||| ||||||||| ||||||  ||||| |||||||| | || |||| |||||||||||    
T  30463149 ttaacaatgctaattaccttgcaaaaccctaaacctagccattttgggcgccaattaaggagagccgtttgatcaaatgagctagctaagcattcatctc 30463050  T
Q  241 a 241  Q
    |    
T  30463049 a 30463049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 142 - 241
Target Start/End: Original strand, 24454538 - 24454637
Alignment:
Q  142 ttaacattgctaataactttgcaaaacctaaacctagaatttttaggcgccaatcaaggaggtccgttggatcaaatcatctggctaggcattcatctca 241  Q
    ||||||||||||| | | ||||||| |||||||||| | |||||||||||||| |||||||| ||||||||||  ||||| ||||| | |||||||||||    
T  24454538 ttaacattgctaagaccattgcaaatcctaaacctaaattttttaggcgccaaacaaggagggccgttggatctcatcatttggcttgacattcatctca 24454637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 2 - 96
Target Start/End: Original strand, 27534888 - 27534982
Alignment:
Q  2 cactatctttatcaccgtactaatgacttactgctatgaagacttatacaaatttctatattatttttagtttctacaatttatatgacccgtgc 96  Q
    |||||||||||| |  |||||||||||||| ||||||||||| || |||  ||||| |||||||| | ||||| |||||| ||||||||||||||    
T  27534888 cactatctttattattgtactaatgacttattgctatgaagatttctactgatttcgatattattgtcagtttgtacaatctatatgacccgtgc 27534982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 181 - 241
Target Start/End: Original strand, 997882 - 997942
Alignment:
Q  181 tttttaggcgccaatcaaggaggtccgttggatcaaatcatctggctaggcattcatctca 241  Q
    ||||||||||||||| ||||| | ||||| |||||||||||||| ||| ||||||||||||    
T  997882 tttttaggcgccaattaaggatggccgtttgatcaaatcatctgactaagcattcatctca 997942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 194
Target Start/End: Original strand, 38014371 - 38014415
Alignment:
Q  149 tgctaataactttgcaaaacctaaacctagaatttttaggcgccaa 194  Q
    ||||||| ||||| |||||||||||||||| |||||||||||||||    
T  38014371 tgctaatgactttacaaaacctaaacctag-atttttaggcgccaa 38014415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University