View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21532_low_20 (Length: 244)
Name: NF21532_low_20
Description: NF21532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21532_low_20 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 4 - 244
Target Start/End: Original strand, 2817483 - 2817720
Alignment:
| Q |
4 |
agagacagacttccccacatattcacccactcttccgataggaaaactctatcaattcggctcgtcgccacactatannnnnnnnnnnnaaattgtatac |
103 |
Q |
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| T |
2817483 |
agagacagacttccccacatattcacccactcttccgataggaaaactctatcaattcggctcgtcgccacactatatgtgtgtgtgtgaaattgtatac |
2817582 |
T |
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| Q |
104 |
aaaaatgtagaatccatgaacatgaaattagtaaaagcaagaaagaaatgatgataataaaaaataacaatggagaaaaggcttgaaccgtaagaagaag |
203 |
Q |
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| T |
2817583 |
aaaaatgtagaatccatgaacatgaaattagtaaaagcaagaaagaaatgatgataataaaaaataacaatggagaaaaggcttgaaccgt---aagaag |
2817679 |
T |
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| Q |
204 |
tagtgaagggatagagagacttgtgggatgattctgtgttg |
244 |
Q |
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| T |
2817680 |
tagtgaagggatagagagacttgtgggatgattctgtgttg |
2817720 |
T |
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Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 4 - 62
Target Start/End: Original strand, 26477646 - 26477704
Alignment:
| Q |
4 |
agagacagacttccccacatattcacccactcttccgataggaaaactctatcaattcg |
62 |
Q |
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| T |
26477646 |
agagacagacttccccacatattcacccactcgtccaaaatgaacaccctatcaattcg |
26477704 |
T |
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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 61
Target Start/End: Complemental strand, 24567646 - 24567600
Alignment:
| Q |
15 |
tccccacatattcacccactcttccgataggaaaactctatcaattc |
61 |
Q |
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| T |
24567646 |
tccccacaaattcacccactcttccgatacaacaactctatcaattc |
24567600 |
T |
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