View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21532_low_21 (Length: 239)
Name: NF21532_low_21
Description: NF21532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21532_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 28111203 - 28110983
Alignment:
| Q |
1 |
ttggaccatctggagagttagaaatgactttatttttaaaaattctccttttggtattgacgacatggtggaggatattaaggtgttagcatggaggtgg |
100 |
Q |
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| T |
28111203 |
ttggaccatctggagagttagaaatgactttatttttaaaaattctccttttggtattgacgacatggtggaggatattaaggtgttagcatggaggtgg |
28111104 |
T |
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| Q |
101 |
gttttgagtcgtttgaagttgccggtttgtttgtattatgaatggacgtggaatccacaagcgtgtttggtgcggtaatggtggatttttgggcctttta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28111103 |
gttttgagtcgtttgaagttgccggtttgtttgtattatgaatggacgtggaatccacaagcgtgtttggtgcggtaatggtggatttttgggcctttta |
28111004 |
T |
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| Q |
201 |
gatgggcgttgaggctttggt |
221 |
Q |
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| ||||||||||||||||||| |
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| T |
28111003 |
ggtgggcgttgaggctttggt |
28110983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 32 - 104
Target Start/End: Original strand, 15559086 - 15559158
Alignment:
| Q |
32 |
atttttaaaaattctccttttggtattgacgacatggtggaggatattaaggtgttagcatggaggtgggttt |
104 |
Q |
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| T |
15559086 |
atttttaataattctccttttggcattgacgagatggtggaggacattaagttgttagcgtggaggtgggttt |
15559158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 33131514 - 33131359
Alignment:
| Q |
1 |
ttggaccatctggagagttagaaatgactttatttttaaaaattctccttttggtattgacgacatggtggaggatattaaggtgttagcatggaggtgg |
100 |
Q |
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| T |
33131514 |
ttggactatctggaaaattagaaatgattttatctttaataactctgtctgcggtgttgatgaagtggtggaggcaattaaggtgttagcttggcggtgg |
33131415 |
T |
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| Q |
101 |
gttttgagtcgtttgaagttgccggtttgtttgtattatgaatggacgtggaatcc |
156 |
Q |
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| T |
33131414 |
gtattgagtcgcttgaatttgccggtttgtttatttaaagaatggacatggaatcc |
33131359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 24837046 - 24837266
Alignment:
| Q |
1 |
ttggaccatctggagagttagaaatgactttatttttaaaaattctccttttggtattgacgacatggtggaggatattaaggtgttagcatggaggtgg |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
24837046 |
ttggaccatctggagagttagaaatgactttatttttaaaaattctccttttggtattgacgacatggtggaggatattaaggtgttagcttggaggtgg |
24837145 |
T |
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| Q |
101 |
gttttgagtcgtttgaagttgccggtttgtttgtattatgaatggacgtggaatccacaagcgtgtttggtgcggtaatggtggatttttgggcctttta |
200 |
Q |
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| T |
24837146 |
gttttgagtcgtttgaagttgccggtttgtttgtattatgaatggacgtggaatccacaagcgtgtttggtgcggtaatggtggatttttgggcctttta |
24837245 |
T |
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| Q |
201 |
gatgggcgttgaggctttggt |
221 |
Q |
| |
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| ||||||||||||||||||| |
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| T |
24837246 |
ggtgggcgttgaggctttggt |
24837266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 34326271 - 34326458
Alignment:
| Q |
1 |
ttggaccatctggagagttagaaatgactttatttttaaaaattctccttttggtattgacgacatggtggaggatattaaggtgttagcatggaggtgg |
100 |
Q |
| |
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|||||| || |||||||||||||||||||| ||||| || |||||||||||| | ||||| || ||||||||||| |||||||||||||||||||||||| |
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| T |
34326271 |
ttggactatttggagagttagaaatgacttcattttcaacaattctccttttcgcattgatgagatggtggaggacattaaggtgttagcatggaggtgg |
34326370 |
T |
|
| Q |
101 |
gttttgagtcgtttgaagttgccggtttgtttgtattatgaatggacgtggaatccacaagcgtgtttggtgcggtaatggtggatttt |
189 |
Q |
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|||||||| || ||||| ||||||||||||||||| || ||||||| ||||||||||||| |||| ||||||||||||||||| |||| |
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| T |
34326371 |
gttttgagccgcttgaa-ttgccggtttgtttgtactacaaatggacttggaatccacaagagtgtctggtgcggtaatggtggttttt |
34326458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 80 - 189
Target Start/End: Original strand, 4028425 - 4028534
Alignment:
| Q |
80 |
aaggtgttagcatggaggtgggttttgagtcgtttgaagttgccggtttgtttgtattatgaatggacgtggaatccacaagcgtgtttggtgcggtaat |
179 |
Q |
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||||||||||||||||| ||||||||||| || ||||| ||||||||||||||||| || |||||||| |||||||| |||| |||| |||||||||||| |
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| T |
4028425 |
aaggtgttagcatggagatgggttttgagccgcttgaatttgccggtttgtttgtactacgaatggacttggaatccgcaagagtgtctggtgcggtaat |
4028524 |
T |
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| Q |
180 |
ggtggatttt |
189 |
Q |
| |
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||||| |||| |
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| T |
4028525 |
ggtggttttt |
4028534 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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