View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21532_low_22 (Length: 238)
Name: NF21532_low_22
Description: NF21532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21532_low_22 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 2816789 - 2816568
Alignment:
| Q |
1 |
tgatttagagttaattgtgttcagaaatttatttagcaataaatacgatcacaatatctttgaaagagagtgtcatccaagtagttaaatcatacacttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2816789 |
tgatttagagttaattgtgttcagaaatttatttagcaataaatacgatcacaatatctttgaaagagagtgtcatccaagtagttaaatcatacacttt |
2816690 |
T |
|
| Q |
101 |
tgcttccagaggatttgaattgttgctatgaattcttcttcactgtatgagcattacaataattagaatctcaagtattgaatatgcaaaacttggacaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
2816689 |
tgcttccagaggatttgaattgttgctatgaattcttcttcactgtatgagcattacaataattagaatctcaagtattgaatatgcaaaacttggacca |
2816590 |
T |
|
| Q |
201 |
acaaagatcaaagctccatttt |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
2816589 |
acaaagatcaaagctccatttt |
2816568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 1423498 - 1423723
Alignment:
| Q |
1 |
tgatttagagttaattgtgttcagaaatttatttagcaataaatacgatcacaatatctttgaaagagagtg--tcatccaagtagttaaatcatacact |
98 |
Q |
| |
|
||||||||||||||| ||||||||| |||||||| |||||||| ||||| ||||||| | |||||| | | |||| | |||||||||||| ||| |
|
|
| T |
1423498 |
tgatttagagttaatagtgttcagatatttattttaaaataaatatgatcataatatctcttaaagagtatacatgatcctaatagttaaatcatctact |
1423597 |
T |
|
| Q |
99 |
ttt-gcttccagaggatttgaattgttgctatgaa---ttcttcttcactgtatgagcattacaataattagaa-tctcaa-gtattgaatatgcaaaac |
192 |
Q |
| |
|
||| ||||||| ||||||||||||||||| |||| |||||||||| |||||||||| | |||||||||||| ||| || | |||||||||||||||| |
|
|
| T |
1423598 |
ttttgcttccaaaggatttgaattgttgcaatgaccgtttcttcttcagtgtatgagcactgcaataattagaaatcttaaagcattgaatatgcaaaac |
1423697 |
T |
|
| Q |
193 |
ttggacaaacaaagatcaaagctcca |
218 |
Q |
| |
|
|||||| || ||||||||||| |||| |
|
|
| T |
1423698 |
ttggaccaagaaagatcaaagatcca |
1423723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University