View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21532_low_23 (Length: 237)
Name: NF21532_low_23
Description: NF21532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21532_low_23 |
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| [»] scaffold0224 (1 HSPs) |
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| [»] scaffold1028 (2 HSPs) |
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| [»] scaffold0807 (2 HSPs) |
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Alignment Details
Target: scaffold0224 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: scaffold0224
Description:
Target: scaffold0224; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 19934 - 19722
Alignment:
| Q |
1 |
aggaaataaagaggaacaattggaataaatccttgtagttaatttagtcaacaagaaatgtttactatcatttaatggacatgaagtatatttcaaaata |
100 |
Q |
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|||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
19934 |
aggaaataaagaggaacagttggaattaatccttgtagttaatttagtcaacaagaaatgtttactatcatttaatggacat-----atatttcaaaata |
19840 |
T |
|
| Q |
101 |
caagtgggaagggaccaacatgtattgacgaaggagacttataaggggaagaatggagatgatgctgaagggacaagagaacgttaccttacaagatcaa |
200 |
Q |
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||||||||||| |||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19839 |
caagtgggaagtgaccaatatgtattgacgaaggagacttataaggggatgaatggagatgatgctgaagggacaagagaacgttaccttacaagatcaa |
19740 |
T |
|
| Q |
201 |
agtgaatttaaggtagaa |
218 |
Q |
| |
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|||||||||||||||||| |
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| T |
19739 |
agtgaatttaaggtagaa |
19722 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 42832854 - 42832642
Alignment:
| Q |
1 |
aggaaataaagaggaacaattggaataaatccttgtagttaatttagtcaacaagaaatgtttactatcatttaatggacatgaagtatatttcaaaata |
100 |
Q |
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|||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
42832854 |
aggaaataaagaggaacagttggaattaatccttgtagttaatttagtcaacaagaaatgtttactatcatttaatggacat-----atatttcaaaata |
42832760 |
T |
|
| Q |
101 |
caagtgggaagggaccaacatgtattgacgaaggagacttataaggggaagaatggagatgatgctgaagggacaagagaacgttaccttacaagatcaa |
200 |
Q |
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||||||||||| |||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42832759 |
caagtgggaagtgaccaatatgtattgacgaaggagacttataaggggatgaatggagatgatgctgaagggacaagagaacgttaccttacaagatcaa |
42832660 |
T |
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| Q |
201 |
agtgaatttaaggtagaa |
218 |
Q |
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|||||||||||||||||| |
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| T |
42832659 |
agtgaatttaaggtagaa |
42832642 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1028 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: scaffold1028
Description:
Target: scaffold1028; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 158
Target Start/End: Complemental strand, 540 - 400
Alignment:
| Q |
18 |
aattggaataaatccttgtagttaatt----tagtcaacaagaaatgtttactatcattt-aatggacatgaagtatatttcaaaatacaagtgggaagg |
112 |
Q |
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||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||| |||| ||||||||||||||| |||| |
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| T |
540 |
aattggaattaatccttgtagttaattaatttagtcaacaagaaatgtttattatcattttaatggacat-----atatctcaaaatacaagtggaaagg |
446 |
T |
|
| Q |
113 |
gaccaacatgtattgacgaaggagacttataaggggaagaatggag |
158 |
Q |
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|||||||||||||||||| ||||||||||| |||||| |||||||| |
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| T |
445 |
gaccaacatgtattgacgtaggagacttatgaggggatgaatggag |
400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1028; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 157 - 220
Target Start/End: Complemental strand, 343 - 280
Alignment:
| Q |
157 |
agatgatgctgaagggacaagagaacgttaccttacaagatcaaagtgaatttaaggtagaaat |
220 |
Q |
| |
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|||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
343 |
agatgatgttgaagtgacaagagcacgttaccttacaagatcaaagtgaatttaaggtagaaat |
280 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0807 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: scaffold0807
Description:
Target: scaffold0807; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 158
Target Start/End: Original strand, 616 - 756
Alignment:
| Q |
18 |
aattggaataaatccttgtagttaatt----tagtcaacaagaaatgtttactatcattt-aatggacatgaagtatatttcaaaatacaagtgggaagg |
112 |
Q |
| |
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||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||| |||| ||||||||||||||| |||| |
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| T |
616 |
aattggaattaatccttgtagttaattaatttagtcaacaagaaatgtttattatcattttaatggacat-----atatctcaaaatacaagtggaaagg |
710 |
T |
|
| Q |
113 |
gaccaacatgtattgacgaaggagacttataaggggaagaatggag |
158 |
Q |
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|||||||||||||||||| ||||||||||| |||||| |||||||| |
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| T |
711 |
gaccaacatgtattgacgtaggagacttatgaggggatgaatggag |
756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0807; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 157 - 220
Target Start/End: Original strand, 810 - 873
Alignment:
| Q |
157 |
agatgatgctgaagggacaagagaacgttaccttacaagatcaaagtgaatttaaggtagaaat |
220 |
Q |
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|||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
810 |
agatgatgttgaagtgacaagagcacgttaccttacaagatcaaagtgaatttaaggtagaaat |
873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 157 - 220
Target Start/End: Complemental strand, 21038397 - 21038334
Alignment:
| Q |
157 |
agatgatgctgaagggacaagagaacgttaccttacaagatcaaagtgaatttaaggtagaaat |
220 |
Q |
| |
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|||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
21038397 |
agatgatgttgaagtgacaagagcacgttaccttacaagatcaaagtgaatttaaggtagaaat |
21038334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 95 - 158
Target Start/End: Complemental strand, 21038516 - 21038454
Alignment:
| Q |
95 |
aaaatacaagtgggaagggaccaacatgtattgacgaaggagacttataaggggaagaatggag |
158 |
Q |
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||||||||||||| |||| ||||||||||||||||| ||||||||||| |||| | |||||||| |
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| T |
21038516 |
aaaatacaagtggaaagg-accaacatgtattgacgtaggagacttatgagggaatgaatggag |
21038454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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