View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21532_low_25 (Length: 231)
Name: NF21532_low_25
Description: NF21532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21532_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 176; Significance: 6e-95; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 19 - 198
Target Start/End: Complemental strand, 1091702 - 1091523
Alignment:
| Q |
19 |
cacatcgggttcaactgcagaggaaactggaggtatcaagaataaataattcaatgaaggattttgctttgcttttgtgataaagcaggatatgattagt |
118 |
Q |
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| T |
1091702 |
cacatcgggttcaactgcagaggaaactggaggtatcaagaataaataattcaatgaaggattttgctttgcttttgtgataaagcaggatatgattagt |
1091603 |
T |
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| Q |
119 |
ttgcaagtttatatgctataatttcaaaagtatctgcaaaaactctgttatggcggctacaaaagcctattttgttattg |
198 |
Q |
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| T |
1091602 |
ttgcaagtttatatgctataatttcaaaagtatttgcaaaaactctgttatggcggctacaaaagcctattttgttattg |
1091523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 19 - 84
Target Start/End: Complemental strand, 36524298 - 36524233
Alignment:
| Q |
19 |
cacatcgggttcaactgcagaggaaactggaggtatcaagaataaataattcaatgaaggattttg |
84 |
Q |
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| T |
36524298 |
cacatcgggttcaattgcagaggaaactggaggtatcaagaataaataattcaatgaaggattttg |
36524233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 111 - 191
Target Start/End: Complemental strand, 36524225 - 36524145
Alignment:
| Q |
111 |
tgattagtttgcaagtttatatgctataatttcaaaagtatctgcaaaaactctgttatggcggctacaaaagcctatttt |
191 |
Q |
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| T |
36524225 |
tgattagtttgcaagttcatatgctataatttcaaaactacttacaaaaactttgtgatggcggttacaaaagcctttttt |
36524145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 110; Significance: 1e-55; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 19 - 198
Target Start/End: Complemental strand, 18096063 - 18095883
Alignment:
| Q |
19 |
cacatcgggttcaactgcagaggaaactggagg-tatcaagaataaataattcaatgaaggattttgctttgcttttgtgataaag-caggatatgatta |
116 |
Q |
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| T |
18096063 |
cacatcgggttcaactgcagaggaaactggagggtatcaagaataaataattca-tgaagggtttttctttgcttttgtgataaaaacaggaattgatta |
18095965 |
T |
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| Q |
117 |
gtttgcaagtttatatgctataatttcaaaagtatctgcaaaaactctgttatggcggctacaaaagcctattttgttattg |
198 |
Q |
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| T |
18095964 |
gtttgcaagttcatatgctataatttcaaaagtacttacaaaaactttgtgatggcggctacaaaagccttttttgttattg |
18095883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 19 - 198
Target Start/End: Complemental strand, 18100360 - 18100180
Alignment:
| Q |
19 |
cacatcgggttcaactgcagaggaaactggagg-tatcaagaataaataattcaatgaaggattttgctttgcttttgtgataaag-caggatatgatta |
116 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |||| |||||||||||||||||| ||||| |||||| |
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| T |
18100360 |
cacatcgggttcaactgcagaggaaactggagggtatcaagaataaataattca-tgaagggtttttctttgcttttgtgataaaaacaggaattgatta |
18100262 |
T |
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| Q |
117 |
gtttgcaagtttatatgctataatttcaaaagtatctgcaaaaactctgttatggcggctacaaaagcctattttgttattg |
198 |
Q |
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| T |
18100261 |
gtttgcaagttcatatgctataatttcaaaagtacttacaaaaactttgtgatggcggctacaaaagccttttttgttattg |
18100180 |
T |
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