View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21532_low_26 (Length: 218)
Name: NF21532_low_26
Description: NF21532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21532_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 17 - 202
Target Start/End: Complemental strand, 44885327 - 44885142
Alignment:
| Q |
17 |
cacctttagccatgcaaacacaatggcccatcacctcataagcagcttttcttcgatactgcacaaatttgtaggcaaatagacctaacataactccaat |
116 |
Q |
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| T |
44885327 |
cacctttagccatgcaaacacaatggcccatcacctcataagcagcttttcttcgatactgcacaaatttgtaggcaaatagacctaacataactccaat |
44885228 |
T |
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| Q |
117 |
ccacaatactaatatccaatttctcttccaactgtccggcagaaagtagatggtatccatacaccgcttcccaacaccgccttcat |
202 |
Q |
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| T |
44885227 |
ccacaatactaatatccaatttctcttccaactgtccggcagaaagtagatggtatccatacaccgcttcccaacaccgccttcat |
44885142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 17 - 147
Target Start/End: Complemental strand, 44898655 - 44898525
Alignment:
| Q |
17 |
cacctttagccatgcaaacacaatggcccatcacctcataagcagcttttcttcgatactgcacaaatttgtaggcaaatagacctaacataactccaat |
116 |
Q |
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| T |
44898655 |
cacctttagccatacagacacaatggcccatcacttcatatgcagcttttcttctatactgcatgaatttgtaggcaaatagaccacacataacaccaat |
44898556 |
T |
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| Q |
117 |
ccacaatactaatatccaatttctcttccaa |
147 |
Q |
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| T |
44898555 |
ccacaatgctaatatccaaattctcttccaa |
44898525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 17 - 169
Target Start/End: Complemental strand, 44914569 - 44914417
Alignment:
| Q |
17 |
cacctttagccatgcaaacacaatggcccatcacctcataagcagcttttcttcgatactgcacaaatttgtaggcaaatagacctaacataactccaat |
116 |
Q |
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| T |
44914569 |
cacctttagccatgcacacacaatgacccattacttcataagcatcttttcttctgtactgcatgaatttgtaggcaaatagaccacacataacaccaat |
44914470 |
T |
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| Q |
117 |
ccacaatactaatatccaatttctcttccaactgtccggcagaaagtagatgg |
169 |
Q |
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||| | ||| ||||||||| |||| | |||| ||||| |||||||||| |||| |
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| T |
44914469 |
ccatagtaccaatatccaagttctttgccaattgtcctgcagaaagtaaatgg |
44914417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 19 - 121
Target Start/End: Complemental strand, 39982569 - 39982467
Alignment:
| Q |
19 |
cctttagccatgcaaacacaatggcccatcacctcataagcagcttttcttcgatactgcacaaatttgtaggcaaatagacctaacataactccaatcc |
118 |
Q |
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||||| |||||||| ||||| || |||||||| | ||| |||| | |||| | ||| ||||||||||| |||||||||| |||||||| || ||||||| |
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| T |
39982569 |
ccttttgccatgcacacacagtgccccatcactttatatgcagatcttctcctatattgcacaaatttaaaggcaaataggcctaacatgacaccaatcc |
39982470 |
T |
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| Q |
119 |
aca |
121 |
Q |
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||| |
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| T |
39982469 |
aca |
39982467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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