View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21532_low_4 (Length: 416)

Name: NF21532_low_4
Description: NF21532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21532_low_4
NF21532_low_4
[»] chr5 (3 HSPs)
chr5 (19-401)||(38263666-38264046)
chr5 (26-401)||(8709132-8709508)
chr5 (26-398)||(20924089-20924462)
[»] scaffold0273 (2 HSPs)
scaffold0273 (113-401)||(19220-19508)
scaffold0273 (26-117)||(20675-20767)
[»] chr1 (2 HSPs)
chr1 (85-399)||(40049977-40050291)
chr1 (85-399)||(35649708-35650022)
[»] chr3 (1 HSPs)
chr3 (85-399)||(41270928-41271242)


Alignment Details
Target: chr5 (Bit Score: 329; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 19 - 401
Target Start/End: Complemental strand, 38264046 - 38263666
Alignment:
Q  19 aacctaacatatctttcttttccaaccaacctaacagccaactatttaaatcaagtgttgaaggca-atggatcccaaggctagatgagaaccatgtaag 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  38264046 aacctaacatatctttcttttccaaccaacctaacagccaactatttaaatcaagtgttgaaggcacatggatcccaaggctagatgagaaccatgtaag 38263947  T
Q  118 cttggaaaaattacattccatgaaaagatgttgaattgtttcagtggcagaattgcacattgggcataacggttcaattttaattcctttcttgcacaaa 217  Q
    |||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38263946 ctt---aaaattacattccatgaaaagatgttgaattgtttcagtggcagaattgcacattgggcataacggttcaattttaattcctttcttgcacaaa 38263850  T
Q  218 tttgctcttgtaggtaggatgnnnnnnnacagccgccaaatgaagctcttgactctattaggaagattcacccgccatatttctttccacaacttttcat 317  Q
    |||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||    
T  38263849 tttgctcttgtaggtaggatgtttttttacagccgccaaatgaagctcttgactctattaggaagattcacccaccatatttctctccacaacttttcat 38263750  T
Q  318 gggggtcatgagatgatccttgtaaactgttcttcctttcatcccataataaatgataagctgaacgcacagagtatttcccgt 401  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  38263749 gggggtcatgagatgatccttgtaaactgttcttcctttcatcccataataaatgataagctgaacgcacggagtatttcccgt 38263666  T

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Target: chr5; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 26 - 401
Target Start/End: Original strand, 8709132 - 8709508
Alignment:
Q  26 catatctttcttttccaaccaacctaacagccaactatttaaatcaagtgttgaaggca-atggatcccaaggctagatgagaaccatgtaagcttggaa 124  Q
    ||||||||||||||| ||||||  || ||||||||| |||||| | ||  ||||||| | ||||||||| ||||||||||||||||||||||||||||||    
T  8709132 catatctttcttttcaaaccaaattagcagccaactgtttaaagcgaggtttgaaggaacatggatcccgaggctagatgagaaccatgtaagcttggaa 8709231  T
Q  125 aaattacattccatgaaaagatgttgaattgtttcagtggcagaattgcacattgggcataacggttcaattttaattcctttcttgcacaaatttgctc 224  Q
    |||||| | ||||||||||||||||||||||| |||||||||||||| ||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  8709232 aaattataatccatgaaaagatgttgaattgtctcagtggcagaattacacattgggcataattgttcaattttaattcctttcttgcacaaatttgctc 8709331  T
Q  225 ttgtaggtaggatgnnnnnnnacagccgccaaatgaagctcttgactctattaggaagattcacccgccatatttctttccacaacttttcatgggggtc 324  Q
    |||| |||||||||       ||||||||||||||||  |||||||||| || ||||||||||| ||||||| |||||||||||| ||| ||||||||||    
T  8709332 ttgtgggtaggatgttttttgacagccgccaaatgaaattcttgactctgtttggaagattcactcgccatacttctttccacaattttgcatgggggtc 8709431  T
Q  325 atgagatgatccttgtaaactgttcttcctttcatcccataataaatgataagctgaacgcacagagtatttcccgt 401  Q
    ||||||||||||| ||||| ||||| | | |||||||| ||||| ||||||||||||||||||| ||||||||||||    
T  8709432 atgagatgatcctggtaaattgttccttcgttcatcccctaatacatgataagctgaacgcacaaagtatttcccgt 8709508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 26 - 398
Target Start/End: Original strand, 20924089 - 20924462
Alignment:
Q  26 catatctttcttttccaaccaacctaacagccaactatttaaatcaagtgttgaaggca-atggatcccaaggctagatgagaaccatgtaagcttggaa 124  Q
    ||||||||||||||||||||||  || ||||||| | |||||| | ||  ||||||| | ||||||||| ||||||||| ||||||| ||||||||||||    
T  20924089 catatctttcttttccaaccaaattagcagccaattgtttaaagcgaggtttgaaggaacatggatcccgaggctagataagaaccaggtaagcttggaa 20924188  T
Q  125 aaattacattccatgaaaagatgttgaattgtttcagtggcagaattgcacattgggcataacggttcaattttaattcctttcttgcacaaatttgctc 224  Q
    |||||||| |||||||| |||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  20924189 aaattacaatccatgaagagatcttgaattgtctcagtggcagaattacacattgggcataacggttcaattttaattcctttcttgcacatatttgctc 20924288  T
Q  225 ttgtaggtaggatgnnnnnnnacagccgccaaatgaagctcttgactctattaggaagattcacccgccatatttctttccacaacttttcatgggggtc 324  Q
    |||| |||| ||||       ||||||||||||||||  |||| ||| | || |||||||||||||||||||  | ||||||||||||| ||||||||||    
T  20924289 ttgtgggtatgatgttttttgacagccgccaaatgaaattctttactatgtttggaagattcacccgccataaatatttccacaactttgcatgggggtc 20924388  T
Q  325 atgagatgatccttgtaaactgttcttcctttcatcccataataaatgataagctgaacgcacagagtatttcc 398  Q
    ||||||||||||| ||||| ||||| | |||||||||| ||||| |||||||||||||||||||||||||||||    
T  20924389 atgagatgatcctggtaaattgttcattctttcatcccctaatacatgataagctgaacgcacagagtatttcc 20924462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0273 (Bit Score: 164; Significance: 2e-87; HSPs: 2)
Name: scaffold0273
Description:

Target: scaffold0273; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 113 - 401
Target Start/End: Complemental strand, 19508 - 19220
Alignment:
Q  113 gtaagcttggaaaaattacattccatgaaaagatgttgaattgtttcagtggcagaattgcacattgggcataacggttcaattttaattcctttcttgc 212  Q
    |||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||| |||| | | |||||||||||||||||||||||||||||||    
T  19508 gtaagcttggaaaaattacaatccatgaaaagatgttgaattgtcttagtggcagaattacacaatagccataacggttcaattttaattcctttcttgc 19409  T
Q  213 acaaatttgctcttgtaggtaggatgnnnnnnnacagccgccaaatgaagctcttgactctattaggaagattcacccgccatatttctttccacaactt 312  Q
    ||| |||| ||||||| |||||||||       ||||||||||||||||  |||||||||| || ||||||||||||||||||| |||||||||||||||    
T  19408 acatattttctcttgtgggtaggatgcttttagacagccgccaaatgaaattcttgactctgtttggaagattcacccgccatacttctttccacaactt 19309  T
Q  313 ttcatgggggtcatgagatgatccttgtaaactgttcttcctttcatcccataataaatgataagctgaacgcacagagtatttcccgt 401  Q
    | ||||||||||||||||||||||| ||||  | ||| | | |||||||| ||||| |||||||||| |||||||||||||||||||||    
T  19308 tgcatgggggtcatgagatgatcctggtaactttttccttcgttcatcccctaatacatgataagctaaacgcacagagtatttcccgt 19220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0273; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 26 - 117
Target Start/End: Complemental strand, 20767 - 20675
Alignment:
Q  26 catatctttcttttccaaccaacctaacagccaactatttaaatcaagtgttgaaggca-atggatcccaaggctagatgagaaccatgtaag 117  Q
    ||||||||||||||||||||||  || || |||||| |||||| | ||  ||||||| | ||||||||| |||||||||||||||| ||||||    
T  20767 catatctttcttttccaaccaaattagcaaccaactgtttaaagcgaggtttgaaggaacatggatcccgaggctagatgagaaccgtgtaag 20675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 85 - 399
Target Start/End: Complemental strand, 40050291 - 40049977
Alignment:
Q  85 atggatcccaaggctagatgagaaccatgtaagcttggaaaaattacattccatgaaaagatgttgaattgtttcagtggcagaattgcacattgggcat 184  Q
    |||||| ||||||||||||||||||||    | ||| | |||||| ||||||||||| || || |||| |||||||||  ||||||||||||| || |||    
T  40050291 atggatgccaaggctagatgagaaccaaactaacttagcaaaattgcattccatgaagaggtggtgaactgtttcagtttcagaattgcacatcggacat 40050192  T
Q  185 aacggttcaattttaattcctttcttgcacaaatttgctcttgtaggtaggatgnnnnnnnacagccgccaaatgaagctcttgactctattaggaagat 284  Q
    || || ||||||||||  ||||| ||  |||| ||| |||| || |||||||||       ||| || ||| || ||| |||| |||||||| || ||||    
T  40050191 aaaggctcaattttaaccccttttttaaacaagtttcctctggtgggtaggatgttttgtgacaacctccagataaagttcttaactctatttgggagat 40050092  T
Q  285 tcacccgccatatttctttccacaacttttcatgggggtcatgagatgatccttgtaaactgttcttcctttcatcccataataaatgataagctgaacg 384  Q
    | || ||||| ||||||||||||| ||| |||| ||  ||||| ||||||||  ||| |  |||||| ||||| || | ||| || ||||||||||||||    
T  40050091 ttacacgccaaatttctttccacagcttctcataggcatcatgtgatgatcccggtagaacgttctttctttcctcgcctaacaagtgataagctgaacg 40049992  T
Q  385 cacagagtatttccc 399  Q
    ||| ||||| |||||    
T  40049991 cacggagtaattccc 40049977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 85 - 399
Target Start/End: Original strand, 35649708 - 35650022
Alignment:
Q  85 atggatcccaaggctagatgagaaccatgtaagcttggaaaaattacattccatgaaaagatgttgaattgtttcagtggcagaattgcacattgggcat 184  Q
    |||||| ||||||||||||||||||||    | ||| | |||||| ||||||||||| || || |||  |||||||||  ||||||||||||| || ||     
T  35649708 atggatgccaaggctagatgagaaccaaactaacttagcaaaattgcattccatgaagaggtggtgagctgtttcagtttcagaattgcacatcggacac 35649807  T
Q  185 aacggttcaattttaattcctttcttgcacaaatttgctcttgtaggtaggatgnnnnnnnacagccgccaaatgaagctcttgactctattaggaagat 284  Q
    || || ||||||||||  ||||||||  |||| ||| |||| || |||| ||||       ||| || ||| || ||| |||| |||||||| || ||||    
T  35649808 aaaggctcaattttaacccctttcttaaacaagtttcctctggtgggtaagatgttttgtgacaacctccagataaagttcttaactctatttgggagat 35649907  T
Q  285 tcacccgccatatttctttccacaacttttcatgggggtcatgagatgatccttgtaaactgttcttcctttcatcccataataaatgataagctgaacg 384  Q
    | || ||||| ||||||||||||| ||| |||||||  ||||| ||||||||  ||| |   ||||| ||||| || | ||| || ||||||||||||||    
T  35649908 ttacacgccaaatttctttccacagcttctcatgggcatcatgtgatgatcccggtagaacattctttctttcctcgcctaacaagtgataagctgaacg 35650007  T
Q  385 cacagagtatttccc 399  Q
    ||| ||||| |||||    
T  35650008 cacggagtaattccc 35650022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 85 - 399
Target Start/End: Original strand, 41270928 - 41271242
Alignment:
Q  85 atggatcccaaggctagatgagaaccatgtaagcttggaaaaattacattccatgaaaagatgttgaattgtttcagtggcagaattgcacattgggcat 184  Q
    |||||| ||||||||||||||||||||    | ||| | |||||| ||||||||||| || || |||  |||||||||  ||||||||||||| || |||    
T  41270928 atggatgccaaggctagatgagaaccaaactaacttagcaaaattgcattccatgaagaggtggtgagctgtttcagtttcagaattgcacatcggacat 41271027  T
Q  185 aacggttcaattttaattcctttcttgcacaaatttgctcttgtaggtaggatgnnnnnnnacagccgccaaatgaagctcttgactctattaggaagat 284  Q
    || || ||||||||||  ||||| ||  |||| ||| |||| || |||||||||       ||| || ||| || ||| |||| |||||||| || ||||    
T  41271028 aaaggctcaattttaaccccttttttaaacaagtttcctctggtgggtaggatgttttgtgacaacctccagataaagttcttaactctatttgggagat 41271127  T
Q  285 tcacccgccatatttctttccacaacttttcatgggggtcatgagatgatccttgtaaactgttcttcctttcatcccataataaatgataagctgaacg 384  Q
    | || ||||| ||||||||||||| ||| |||| ||  || || ||||||||  ||| |  |||||| ||||| || | ||| || ||||||||||||||    
T  41271128 ttacacgccaaatttctttccacagcttctcataggcatcgtgtgatgatcccggtagaacgttctttctttcctcgcctaacaagtgataagctgaacg 41271227  T
Q  385 cacagagtatttccc 399  Q
    ||  ||||| |||||    
T  41271228 caaggagtaattccc 41271242  T

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