View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21532_low_5 (Length: 400)
Name: NF21532_low_5
Description: NF21532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21532_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 25 - 390
Target Start/End: Complemental strand, 52396459 - 52396091
Alignment:
| Q |
25 |
gaagaagaagaaggtgctacagcttctcacgcaattcatatcaaagaagaagttcttgaagaagacgacggtgcta---acgcttcatcttcactcaggt |
121 |
Q |
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| T |
52396459 |
gaagaagaagaaggtgctacagcttctcacgcaattcatatcaaagaagaagttcttgaagaagacgacggtgctgctcacgcttcatcttcactcaggt |
52396360 |
T |
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| Q |
122 |
ttccaaaaccaatggaagggctacatgaggttggtccaccaccgtttctcaagaaaacttttgaaatggtggatgatccggaaactgacccgattgtttc |
221 |
Q |
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| T |
52396359 |
ttccaaaaccaatggaagggctacatgaggttggtccaccaccgtttctcaagaagacttttgaaatggtggaggatctggaaactgacccgattgtttc |
52396260 |
T |
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| Q |
222 |
atggagtgcttctcgtgatagttttgttgtttgggattctcatgaattctccaaaattcttcttcctaagtactttaagcataataatttttctagcttc |
321 |
Q |
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| T |
52396259 |
atggagtgcttctcgtgatagttttgttgtttgggattctcatgaattctccaaaattcttcttcctaagtactttaagcataataatttttctagcttc |
52396160 |
T |
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| Q |
322 |
attcgccagctcaacacctatgtaagtcnnnnnnnttctcacaatcctattaataatcgtaattctctg |
390 |
Q |
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| T |
52396159 |
attcgccagctcaacacctatgtaagtcaaaaaaattctcacaatcctattaataatcgtaattctctg |
52396091 |
T |
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