View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21532_low_8 (Length: 338)
Name: NF21532_low_8
Description: NF21532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21532_low_8 |
 | |
|
| [»] scaffold0383 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 11 - 322
Target Start/End: Original strand, 32263024 - 32263335
Alignment:
| Q |
11 |
gagaagaagtattaagtgaagaacaaattgatatgattattgctaatcaattagcaactatattttcccaatgtcaatcaatcactaaaaattctcatat |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
32263024 |
gagaagaagtattaagtgaagaacaaattgatatgattattgctaatcaattagcaagtatattttcccaatgtcaatcaatcactaaaaactctcatat |
32263123 |
T |
|
| Q |
111 |
caaggtacttagcaaaacaaagaatatgttaatctcaagcaaaacaagtggcaaaataatccaagagaaagacatgcaactactaacaagttttgaagta |
210 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
32263124 |
caaggtacttagcaaaacaaagaatatgctaatctcaagcaaaacaagtggcaaaataatccaagaaaaagacatgcaactactaacaagttttgaagta |
32263223 |
T |
|
| Q |
211 |
ccattttactcactaaacaaggaattattaaactataaaccaagaatcttaaaagaattatgcttaagcataagaggaagcattaatcatgctttcgagt |
310 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
32263224 |
ccattctactcactaaacaaggaattattaaactataaaccaagaatcttaaaagaattatgcttaagcataagaggaagcattaatcatgcttgtgagt |
32263323 |
T |
|
| Q |
311 |
tgtgcatgcatg |
322 |
Q |
| |
|
||| | |||||| |
|
|
| T |
32263324 |
tgtacgtgcatg |
32263335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 25 - 304
Target Start/End: Complemental strand, 34414087 - 34413808
Alignment:
| Q |
25 |
agtgaagaacaaattgatatgattattgctaatcaattagcaactatattttcccaatgtcaatcaatcactaaaaattctcatatcaaggtacttagca |
124 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||| |||| ||| ||| ||||||||| | ||| ||||| |||| ||||||||||||| |
|
|
| T |
34414087 |
agtgaagaacaaatcaatatgattattgctaatcaattagcaagcatatattcataatatcaatcaattaataagaattcatatattaaggtacttagca |
34413988 |
T |
|
| Q |
125 |
aaacaaagaatatgttaatctcaagcaaaacaagtggcaaaataatccaagagaaagacatgcaactactaacaagttttgaagtaccattttactcact |
224 |
Q |
| |
|
||||||| |||||||| | || ||||||||||||||||||| ||||||| ||||| ||||||||||| ||||||||||||||||| |||||||||| | | |
|
|
| T |
34413987 |
aaacaaaaaatatgttgaccttaagcaaaacaagtggcaaactaatccatgagaaggacatgcaacttctaacaagttttgaagtcccattttactaatt |
34413888 |
T |
|
| Q |
225 |
aaacaaggaattattaaactataaaccaagaatcttaaaagaattatgcttaagcataagaggaagcattaatcatgctt |
304 |
Q |
| |
|
||||||| ||||||| || || ||||| || || | |||||||| ||||| || | || ||| ||||||||||||| |
|
|
| T |
34413887 |
ggacaaggagatattaaattacaagccaagcattttgagtgaattatgtttaagtatcaaagaaagtattaatcatgctt |
34413808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 13 - 323
Target Start/End: Original strand, 27360346 - 27360656
Alignment:
| Q |
13 |
gaagaagtattaagtgaagaacaaattgatatgattattgctaatcaattagcaactatattttcccaatgtcaatcaatcactaaaaattctcatatca |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
27360346 |
gaagaagtattaagtgaagaacaaattgatatgattattgctaatcaattagcaagtatattttcccaatgtcaatcaatcactaaaaattctcatatta |
27360445 |
T |
|
| Q |
113 |
aggtacttagcaaaacaaagaatatgttaatctcaagcaaaacaagtggcaaaataatccaagagaaagacatgcaactactaacaagttttgaagtacc |
212 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
27360446 |
aggtacttagtaaaacaaagaatatgttaatctcaagcaaaacaagtggcaaaataatccatgagaaagacatgcaactactaacaagttttcaagtacc |
27360545 |
T |
|
| Q |
213 |
attttactcactaaacaaggaattattaaactataaaccaagaatcttaaaagaattatgcttaagcataagaggaagcattaatcatgctttcgagttg |
312 |
Q |
| |
|
||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
27360546 |
attctactcactaaacaaggagttattaaactataagccaagaatcttaaaagaattatgcttaagcataagaggaagcattaatcatgcttgtgagttg |
27360645 |
T |
|
| Q |
313 |
tgcatgcatga |
323 |
Q |
| |
|
||||||||||| |
|
|
| T |
27360646 |
tgcatgcatga |
27360656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0383 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: scaffold0383
Description:
Target: scaffold0383; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 13 - 323
Target Start/End: Complemental strand, 14126 - 13816
Alignment:
| Q |
13 |
gaagaagtattaagtgaagaacaaattgatatgattattgctaatcaattagcaactatattttcccaatgtcaatcaatcactaaaaattctcatatca |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
14126 |
gaagaagtattaagtgaagaacaaattgatatgattattgctaatcaattagcaagtatattttcccaatgtcaatcaatcactaaaaattctcatatta |
14027 |
T |
|
| Q |
113 |
aggtacttagcaaaacaaagaatatgttaatctcaagcaaaacaagtggcaaaataatccaagagaaagacatgcaactactaacaagttttgaagtacc |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
14026 |
aggtacttagcaaaacaaagaatatgttaatctcaagcaaaacaagtggcaaaataatcaatgagaaagacatgcaactactaacaagttttgaattacc |
13927 |
T |
|
| Q |
213 |
attttactcactaaacaaggaattattaaactataaaccaagaatcttaaaagaattatgcttaagcataagaggaagcattaatcatgctttcgagttg |
312 |
Q |
| |
|
||| ||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
13926 |
attctactcactaaacaaggagttattaaactataagccaagaatcttaagagaattatgcttaagcataagaggaagcattaatcatgcttgtgagttg |
13827 |
T |
|
| Q |
313 |
tgcatgcatga |
323 |
Q |
| |
|
|||||||||| |
|
|
| T |
13826 |
ggcatgcatga |
13816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 13 - 323
Target Start/End: Original strand, 23934390 - 23934700
Alignment:
| Q |
13 |
gaagaagtattaagtgaagaacaaattgatatgattattgctaatcaattagcaactatattttcccaatgtcaatcaatcactaaaaattctcatatca |
112 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| | |
|
|
| T |
23934390 |
gaagaagtactaagtgaagaacaaattgatatgattattgctaatcaattagcaagtatatttttccaatgtcaatcaatcactaaaaattctcatatta |
23934489 |
T |
|
| Q |
113 |
aggtacttagcaaaacaaagaatatgttaatctcaagcaaaacaagtggcaaaataatccaagagaaagacatgcaactactaacaagttttgaagtacc |
212 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23934490 |
aggtactttgcaaaacaaagaatatgttaatctcaagaaaaacaagtggcaaaataatccatgagaaagacatgcaactactaacaagttttgaagtacc |
23934589 |
T |
|
| Q |
213 |
attttactcactaaacaaggaattattaaactataaaccaagaatcttaaaagaattatgcttaagcataagaggaagcattaatcatgctttcgagttg |
312 |
Q |
| |
|
||| ||||||||||||||| |||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
23934590 |
attctactcactaaacaagaaattattaaactataagccaagaatcttaagagaattatgcttaagcataagaggaagcattaatcatgcttgtgagttg |
23934689 |
T |
|
| Q |
313 |
tgcatgcatga |
323 |
Q |
| |
|
||||||||||| |
|
|
| T |
23934690 |
tgcatgcatga |
23934700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 13 - 322
Target Start/End: Complemental strand, 23928191 - 23927882
Alignment:
| Q |
13 |
gaagaagtattaagtgaagaacaaattgatatgattattgctaatcaattagcaactatattttcccaatgtcaatcaatcactaaaaattctcatatca |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| | |
|
|
| T |
23928191 |
gaagaagtattaagtgaagaacaaattgatatgattatttctaatcaattagcaagtatatttttccaatgtcaatcaatcactaaaaattctcatatta |
23928092 |
T |
|
| Q |
113 |
aggtacttagcaaaacaaagaatatgttaatctcaagcaaaacaagtggcaaaataatccaagagaaagacatgcaactactaacaagttttgaagtacc |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23928091 |
aggtacttagcaaaacaaagaatatgttaatttcaagcaaaacaagtggcaaaataattcatgagaaagacatgcaactactaacaagttttgaagtacc |
23927992 |
T |
|
| Q |
213 |
attttactcactaaacaaggaattattaaactataaaccaagaatcttaaaagaattatgcttaagcataagaggaagcattaatcatgctttcgagttg |
312 |
Q |
| |
|
||| ||||||||||||||||| |||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
23927991 |
attctactcactaaacaaggagttattaaactataagccaagaatcttaagagaattgtgcttaagcataagaggaagcattaatcatgcttgtgagttg |
23927892 |
T |
|
| Q |
313 |
tgcatgcatg |
322 |
Q |
| |
|
|||||||||| |
|
|
| T |
23927891 |
tgcatgcatg |
23927882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 254; Significance: 1e-141; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 13 - 322
Target Start/End: Original strand, 24962877 - 24963186
Alignment:
| Q |
13 |
gaagaagtattaagtgaagaacaaattgatatgattattgctaatcaattagcaactatattttcccaatgtcaatcaatcactaaaaattctcatatca |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| | |
|
|
| T |
24962877 |
gaagaagtattaagtgaagaacaaattgatatgattatttctaatcaattagcaagtatatttttccaatgtcaatcaatcactaaaaattctcatatta |
24962976 |
T |
|
| Q |
113 |
aggtacttagcaaaacaaagaatatgttaatctcaagcaaaacaagtggcaaaataatccaagagaaagacatgcaactactaacaagttttgaagtacc |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24962977 |
aggtacttagcaaaacaaagaatatgttaatttcaagcaaaacaagtggcaaaataattcatgagaaagacatgcaactactaacaagttttgaagtacc |
24963076 |
T |
|
| Q |
213 |
attttactcactaaacaaggaattattaaactataaaccaagaatcttaaaagaattatgcttaagcataagaggaagcattaatcatgctttcgagttg |
312 |
Q |
| |
|
||| ||||||||||||||||| |||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
24963077 |
attctactcactaaacaaggagttattaaactataagccaagaatcttaagagaattgtgcttaagcataagaggaagcattaatcatgcttgtgagttg |
24963176 |
T |
|
| Q |
313 |
tgcatgcatg |
322 |
Q |
| |
|
|||||||||| |
|
|
| T |
24963177 |
tgcatgcatg |
24963186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 150 - 323
Target Start/End: Original strand, 20412769 - 20412942
Alignment:
| Q |
150 |
caaaacaagtggcaaaataatccaagagaaagacatgcaactactaacaagttttgaagtaccattttactcactaaacaaggaattattaaactataaa |
249 |
Q |
| |
|
|||||||||||||||| ||||||| ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
20412769 |
caaaacaagtggcaaagtaatccatgagaaagacatgcaattactaacaagctttgaagtaccattttactcactaaacaaggagttaataaactataag |
20412868 |
T |
|
| Q |
250 |
ccaagaatcttaaaagaattatgcttaagcataagaggaagcattaatcatgctttcgagttgtgcatgcatga |
323 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
20412869 |
ccaagaatcttaagagaattatgcttaagcataaaaggaagcattaatcatgcttgtgagttgtgcatgcatga |
20412942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 13 - 154
Target Start/End: Original strand, 20408616 - 20408757
Alignment:
| Q |
13 |
gaagaagtattaagtgaagaacaaattgatatgattattgctaatcaattagcaactatattttcccaatgtcaatcaatcactaaaaattctcatatca |
112 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| | |
|
|
| T |
20408616 |
gaagaagtattaagtgaagaaaaaattgatatgattattgctaatcaattagcaagtatattttcccaatgccaatcaatcactaaaaattctcatatta |
20408715 |
T |
|
| Q |
113 |
aggtacttagcaaaacaaagaatatgttaatctcaagcaaaa |
154 |
Q |
| |
|
| |||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
20408716 |
aagtacttagtaaaacaaagaatatgttaatctcaagcaaaa |
20408757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 26 - 277
Target Start/End: Original strand, 29081865 - 29082115
Alignment:
| Q |
26 |
gtgaagaacaaattgatatgattattgctaatcaattagcaactatattttcccaatgtcaatcaatcactaaaaattctcatatcaaggtacttagcaa |
125 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||| |||| |||| ||||||||||||| | || |||||| |||| |||||||||||||| |
|
|
| T |
29081865 |
gtgaagaacaaatcaatatgattattgctaatcaattagcaagcatatattcctaatgtcaatcaattaatatgaattcttatattaaggtacttagcaa |
29081964 |
T |
|
| Q |
126 |
aac-aaagaatatgttaatctcaagcaaaacaagtggcaaaataatccaagagaaagacatgcaactactaacaagttttgaagtaccattttactcact |
224 |
Q |
| |
|
||| ||| |||||||| ||| |||||| ||||||||| || ||||| | ||| ||||||||||| ||||||||||||||||| |||||||||||| | |
|
|
| T |
29081965 |
aacaaaaaaatatgttgatcgtaagcaagacaagtggcgaactaatcta--tgaaggacatgcaacttctaacaagttttgaagtcccattttactcatt |
29082062 |
T |
|
| Q |
225 |
aaacaaggaattattaaactataaaccaagaatcttaaaagaattatgcttaa |
277 |
Q |
| |
|
| ||||| |||||||| || || ||||| || |||| |||||||| |||| |
|
|
| T |
29082063 |
ggataaggagttattaaattacaagccaagcattttaagtgaattatgtttaa |
29082115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 275 - 323
Target Start/End: Complemental strand, 22241724 - 22241676
Alignment:
| Q |
275 |
taagcataagaggaagcattaatcatgctttcgagttgtgcatgcatga |
323 |
Q |
| |
|
||||||||| |||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
22241724 |
taagcataaaaggaagcattaatcatgcttgtgagttgtgcatgcatga |
22241676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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