View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21532_low_9 (Length: 316)
Name: NF21532_low_9
Description: NF21532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21532_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 16 - 308
Target Start/End: Original strand, 4690899 - 4691191
Alignment:
| Q |
16 |
ttctcaacacaaaatgaagaaaattttgcattgcaacaaagttttatatttctaagatattttgaagcctctcaaatctaaaagcaatcataactatttt |
115 |
Q |
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| T |
4690899 |
ttctcaacacaaaatgaagaaaattttgcattgcaacaaggttt-atatttctaagatattttgaagcctctcaaatctaaaagcaatcataactatttt |
4690997 |
T |
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| Q |
116 |
atattattctatttccatttaaagataaaggttttcctttccnnnnnnnnnn-tttacaaattagtttttgcactccccaaaattcccactagtctttat |
214 |
Q |
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| T |
4690998 |
atattattctatttccattcaaagataaaggttttccttaccaaaaaaatatatttacaaattagtttttgcactccccaaaattcccactagtctttat |
4691097 |
T |
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| Q |
215 |
ttgatgaccatttatatcaccatgagaattttcctagagtgagcaattgcatgaaagctttcgaagcgagaatcataaaatcaaatcaaagtat |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |
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| T |
4691098 |
ttgatgaccatttatatcaccatgagaattttcctagagtgagcaattgcatgaaagcttttgaagagagaatcataaaatcaaatcaaagtat |
4691191 |
T |
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