View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21533_low_1 (Length: 556)

Name: NF21533_low_1
Description: NF21533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21533_low_1
NF21533_low_1
[»] chr8 (3 HSPs)
chr8 (20-296)||(2944308-2944570)
chr8 (295-436)||(2943873-2944014)
chr8 (464-542)||(2943782-2943860)
[»] scaffold0028 (1 HSPs)
scaffold0028 (193-224)||(77467-77498)
[»] chr5 (3 HSPs)
chr5 (193-232)||(19506114-19506153)
chr5 (196-229)||(3421323-3421356)
chr5 (195-231)||(39807100-39807136)
[»] chr1 (2 HSPs)
chr1 (196-225)||(3592836-3592865)
chr1 (193-229)||(41069077-41069113)
[»] chr7 (2 HSPs)
chr7 (193-229)||(9669244-9669280)
chr7 (193-229)||(24865056-24865092)
[»] chr4 (3 HSPs)
chr4 (193-229)||(11133202-11133238)
chr4 (193-229)||(13540268-13540304)
chr4 (193-229)||(32125998-32126034)
[»] chr3 (1 HSPs)
chr3 (193-229)||(17517698-17517734)


Alignment Details
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 20 - 296
Target Start/End: Complemental strand, 2944570 - 2944308
Alignment:
Q  20 agttaagccgcgcatgaatgaatagaagaacaatcgcaacataccctctaaacaagatttttcacctttggcggaggtttgatcttccattgtttcagcc 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2944570 agttaagccgcgcatgaatgaatagaagaacaatcgcaacataccctctaaacaagatttttcacctttggcggaggtttgatcttccattgtttcagcc 2944471  T
Q  120 tttgcaagtgacttgtaattctaatggtctaggtacaaatccgatacgaaattttgcatataaaagnnnnnnntatttaataaaaacattacattaatgt 219  Q
    || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||       ||||||||||||| |||||||||||||    
T  2944470 ttcgcaagtgacttgtaattctaatggtctaggtataaatccgatacgaaattttgcatataaaagaaaaaaatatttaataaaaaaattacattaatgt 2944371  T
Q  220 tgataattttaaatttttaagaaagataatatccatgaaatatgtttaaatatttcacaatattacaaaaacaatta 296  Q
    |||||||              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2944370 tgataat--------------aaagataatatccatgaaatatgtttaaatatttcacaatattacaaaaacaatta 2944308  T

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Target: chr8; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 295 - 436
Target Start/End: Complemental strand, 2944014 - 2943873
Alignment:
Q  295 tattattttttatataattaaagcaatgttatgcacactcgttaaagtgcaccctcttcaattcaaataaatccaaatatccaattaaggagaaaacaat 394  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2944014 tattattttttatataattaacgcaatgttatgcacactcgttaaagtgcaccctcttcaattcaaataaatccaaatatccaattaaggagaaaacaat 2943915  T
Q  395 aacttccttcttcagcattaatgtaataggatcacactcgaa 436  Q
    |||||||||||| |||||||||||||||||||||||||||||    
T  2943914 aacttccttctttagcattaatgtaataggatcacactcgaa 2943873  T

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Target: chr8; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 464 - 542
Target Start/End: Complemental strand, 2943860 - 2943782
Alignment:
Q  464 accaagacatcatcacagtctcttaatacgtccaagtctttctagcgcaagaataaataggatcaccttgtctaagtcc 542  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  2943860 accaagacatcatcacagtctcttaatacgtccaagtctttctagcgcaagaataaattggatcaccttgtctaagtcc 2943782  T

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Target: scaffold0028 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 193 - 224
Target Start/End: Complemental strand, 77498 - 77467
Alignment:
Q  193 tatttaataaaaacattacattaatgttgata 224  Q
    ||||||||||||||||||||||||||||||||    
T  77498 tatttaataaaaacattacattaatgttgata 77467  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 193 - 232
Target Start/End: Complemental strand, 19506153 - 19506114
Alignment:
Q  193 tatttaataaaaacattacattaatgttgataattttaaa 232  Q
    ||||||||| ||||| ||||||||||||||||||||||||    
T  19506153 tatttaatataaacactacattaatgttgataattttaaa 19506114  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 229
Target Start/End: Original strand, 3421323 - 3421356
Alignment:
Q  196 ttaataaaaacattacattaatgttgataatttt 229  Q
    |||||| |||||||||||||||||||||||||||    
T  3421323 ttaatagaaacattacattaatgttgataatttt 3421356  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 195 - 231
Target Start/End: Original strand, 39807100 - 39807136
Alignment:
Q  195 tttaataaaaacattacattaatgttgataattttaa 231  Q
    ||||||||||||||||  |||||||||||||||||||    
T  39807100 tttaataaaaacattatgttaatgttgataattttaa 39807136  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 225
Target Start/End: Original strand, 3592836 - 3592865
Alignment:
Q  196 ttaataaaaacattacattaatgttgataa 225  Q
    ||||||||||||||||||||||||||||||    
T  3592836 ttaataaaaacattacattaatgttgataa 3592865  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 193 - 229
Target Start/End: Original strand, 41069077 - 41069113
Alignment:
Q  193 tatttaataaaaacattacattaatgttgataatttt 229  Q
    ||||||||| ||||||||||||||||||||| |||||    
T  41069077 tatttaatacaaacattacattaatgttgatgatttt 41069113  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 193 - 229
Target Start/End: Complemental strand, 9669280 - 9669244
Alignment:
Q  193 tatttaataaaaacattacattaatgttgataatttt 229  Q
    ||||||||||||||| ||||||||| |||||||||||    
T  9669280 tatttaataaaaacactacattaatattgataatttt 9669244  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 193 - 229
Target Start/End: Complemental strand, 24865092 - 24865056
Alignment:
Q  193 tatttaataaaaacattacattaatgttgataatttt 229  Q
    |||||||||||||||||||||||||  ||||||||||    
T  24865092 tatttaataaaaacattacattaattctgataatttt 24865056  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 193 - 229
Target Start/End: Original strand, 11133202 - 11133238
Alignment:
Q  193 tatttaataaaaacattacattaatgttgataatttt 229  Q
    |||| ||||||||||||| ||||||||||||||||||    
T  11133202 tattcaataaaaacattatattaatgttgataatttt 11133238  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 193 - 229
Target Start/End: Complemental strand, 13540304 - 13540268
Alignment:
Q  193 tatttaataaaaacattacattaatgttgataatttt 229  Q
    ||||||||||||||| ||||||||| |||||||||||    
T  13540304 tatttaataaaaacactacattaatattgataatttt 13540268  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 193 - 229
Target Start/End: Original strand, 32125998 - 32126034
Alignment:
Q  193 tatttaataaaaacattacattaatgttgataatttt 229  Q
    ||||||||||||||||||||||||| |||||| ||||    
T  32125998 tatttaataaaaacattacattaatattgatattttt 32126034  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 193 - 229
Target Start/End: Original strand, 17517698 - 17517734
Alignment:
Q  193 tatttaataaaaacattacattaatgttgataatttt 229  Q
    ||||||||| ||||||| |||||||||||||||||||    
T  17517698 tatttaatagaaacattgcattaatgttgataatttt 17517734  T

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