View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21534_high_1 (Length: 669)
Name: NF21534_high_1
Description: NF21534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21534_high_1 |
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| [»] chr4 (13 HSPs) |
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| [»] chr1 (2 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 449; Significance: 0; HSPs: 13)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 50 - 669
Target Start/End: Complemental strand, 26434871 - 26434237
Alignment:
| Q |
50 |
tagcaaagagcgtcaacgtaatatttcacatttttcttcaatgaaaagcatcatttttagaataaatggattgctcaaaagtaaagtagcgttgtggagc |
149 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
26434871 |
tagcaaagagcgtcaacgtaatatttcacatttttcttcaataaaaagcatcatttttagaacaaatggattgctcaaaagtaaagtagcgttgtggagc |
26434772 |
T |
|
| Q |
150 |
tcactcatttatggaaaattgagtc---gttgcgttggtttaatcagtttacacatatggccaagttagaataatagatgagtgtacttaactggtttgc |
246 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26434771 |
tcactcatttatgaaaaattgagtcgttgttgcgttggtttaatcagtttacacatatggccaagttagaataatagatgagtgtacttaactggtttgc |
26434672 |
T |
|
| Q |
247 |
ttaaaagtac------------nnnnnnnnnncaatttgaactaacattgaagtgaagtcgaacggttttatgtctatcttctggcccttatttcttcat |
334 |
Q |
| |
|
|||||||||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| | |||||| || |
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| T |
26434671 |
ttaaaagtacttttttttttcaattcggtattcaatttgtactaacattgaagtgaagtcgaacggttctatgtctatcttctggcccgtgtttctttat |
26434572 |
T |
|
| Q |
335 |
cttcaaataattcatttaagatcatgtgaattaaatataactttaaaaattagtaccgaaagaagttaagcacaaaagtatgatgcggatcca-gtacga |
433 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||| | |||||| |
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|
| T |
26434571 |
cttcaaataattcatttaagatcatgtgaattaa--ataactttaaaaattagtactgaaagaagttacgcacaaaagtatgatgcggatcaatgtacga |
26434474 |
T |
|
| Q |
434 |
tacattttagaagtcatatataatgaatcccaccattataacacnnnnnnngaaggatcagccagatcaaaatccttcaattacatcattaaaacagggg |
533 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26434473 |
tacattttagaagtcatatataatcaatcccaccattataacac-aaaaaagaaggatcagccagatcaaaatccttcaattacatcattaaaacagggg |
26434375 |
T |
|
| Q |
534 |
aaagctactaatgaaacctaaaa--acggatctacgaaactaaacaccaataaacaacaacgaagtagttttcaaatctaagaactagtaaacttagtga |
631 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26434374 |
aaagctactaatgaaacctaaaaacacggatctacgaaactaaacaccaataaacaacaacgaagtagttttcaaatctaagaactagtaaacttagtga |
26434275 |
T |
|
| Q |
632 |
cagccttggtaccctcagaaacagcatgcttggccaat |
669 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
26434274 |
cagccttggtaccctcagaaacagcatgcttggccaat |
26434237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 50 - 669
Target Start/End: Complemental strand, 26833582 - 26832948
Alignment:
| Q |
50 |
tagcaaagagcgtcaacgtaatatttcacatttttcttcaatgaaaagcatcatttttagaataaatggattgctcaaaagtaaagtagcgttgtggagc |
149 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
26833582 |
tagcaaagagcgtcaacgtaatatttcacatttttcttcaataaaaagcatcatttttagaacaaatggattgctcaaaagtaaagtagcgttgtggagc |
26833483 |
T |
|
| Q |
150 |
tcactcatttatggaaaattgagtc---gttgcgttggtttaatcagtttacacatatggccaagttagaataatagatgagtgtacttaactggtttgc |
246 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26833482 |
tcactcatttatgaaaaattgagtcgttgttgcgttggtttaatcagtttacacatatggccaagttagaataatagatgagtgtacttaactggtttgc |
26833383 |
T |
|
| Q |
247 |
ttaaaagtac------------nnnnnnnnnncaatttgaactaacattgaagtgaagtcgaacggttttatgtctatcttctggcccttatttcttcat |
334 |
Q |
| |
|
|||||||||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| | |||||| || |
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|
| T |
26833382 |
ttaaaagtacttttttttttcaattcggtattcaatttgtactaacattgaagtgaagtcgaacggttctatgtctatcttctggcccgtgtttctttat |
26833283 |
T |
|
| Q |
335 |
cttcaaataattcatttaagatcatgtgaattaaatataactttaaaaattagtaccgaaagaagttaagcacaaaagtatgatgcggatcca-gtacga |
433 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||| | |||||| |
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|
| T |
26833282 |
cttcaaataattcatttaagatcatgtgaattaa--ataactttaaaaattagtactgaaagaagttacgcacaaaagtatgatgcggatcaatgtacga |
26833185 |
T |
|
| Q |
434 |
tacattttagaagtcatatataatgaatcccaccattataacacnnnnnnngaaggatcagccagatcaaaatccttcaattacatcattaaaacagggg |
533 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26833184 |
tacattttagaagtcatatataatcaatcccaccattataacac-aaaaaagaaggatcagccagatcaaaatccttcaattacatcattaaaacagggg |
26833086 |
T |
|
| Q |
534 |
aaagctactaatgaaacctaaaa--acggatctacgaaactaaacaccaataaacaacaacgaagtagttttcaaatctaagaactagtaaacttagtga |
631 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26833085 |
aaagctactaatgaaacctaaaaacacggatctacgaaactaaacaccaataaacaacaacgaagtagttttcaaatctaagaactagtaaacttagtga |
26832986 |
T |
|
| Q |
632 |
cagccttggtaccctcagaaacagcatgcttggccaat |
669 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26832985 |
cagccttggtaccctcagaaacagcatgcttggccaat |
26832948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 603 - 669
Target Start/End: Complemental strand, 26436083 - 26436017
Alignment:
| Q |
603 |
tcaaatctaagaactagtaaacttagtgacagccttggtaccctcagaaacagcatgcttggccaat |
669 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
26436083 |
tcaaatctaagaactggtaaacttagtgacagccttggtaccctcagaaacatcatgcttggccaat |
26436017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 601 - 669
Target Start/End: Original strand, 23415706 - 23415774
Alignment:
| Q |
601 |
tttcaaatctaagaactagtaaacttagtgacagccttggtaccctcagaaacagcatgcttggccaat |
669 |
Q |
| |
|
|||||| ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23415706 |
tttcaagtctaagagctagtaaacttagtcacagccttggtaccctcagaaacagcatgcttggccaat |
23415774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 603 - 669
Target Start/End: Complemental strand, 24307502 - 24307436
Alignment:
| Q |
603 |
tcaaatctaagaactagtaaacttagtgacagccttggtaccctcagaaacagcatgcttggccaat |
669 |
Q |
| |
|
|||||||||||||||||| ||||| || ||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
24307502 |
tcaaatctaagaactagtgaacttggtcacagctttggtaccctcagaaacagcatgcttggccaat |
24307436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 607 - 669
Target Start/End: Original strand, 23453375 - 23453437
Alignment:
| Q |
607 |
atctaagaactagtaaacttagtgacagccttggtaccctcagaaacagcatgcttggccaat |
669 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||| || |||||||||||||||||||||||| |
|
|
| T |
23453375 |
atctaagaactagtaaacttggtcacagccttggtgccttcagaaacagcatgcttggccaat |
23453437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 608 - 669
Target Start/End: Original strand, 23408544 - 23408605
Alignment:
| Q |
608 |
tctaagaactagtaaacttagtgacagccttggtaccctcagaaacagcatgcttggccaat |
669 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||| || |||||||||||||||||||||||| |
|
|
| T |
23408544 |
tctaagagctagtaaacttagtcacagccttggtgccttcagaaacagcatgcttggccaat |
23408605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 604 - 669
Target Start/End: Complemental strand, 23886105 - 23886040
Alignment:
| Q |
604 |
caaatctaagaactagtaaacttagtgacagccttggtaccctcagaaacagcatgcttggccaat |
669 |
Q |
| |
|
||||||||||||||||||||||| || ||||| ||||| |||||||| |||||||||||||||||| |
|
|
| T |
23886105 |
caaatctaagaactagtaaacttggtcacagctttggttccctcagagacagcatgcttggccaat |
23886040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 605 - 669
Target Start/End: Complemental strand, 23402351 - 23402287
Alignment:
| Q |
605 |
aaatctaagaactagtaaacttagtgacagccttggtaccctcagaaacagcatgcttggccaat |
669 |
Q |
| |
|
|||||||||||||||||||||| || ||||| ||||| ||||| || |||||||||||||||||| |
|
|
| T |
23402351 |
aaatctaagaactagtaaacttggtcacagctttggttccctctgagacagcatgcttggccaat |
23402287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 607 - 669
Target Start/End: Original strand, 34662044 - 34662106
Alignment:
| Q |
607 |
atctaagaactagtaaacttagtgacagccttggtaccctcagaaacagcatgcttggccaat |
669 |
Q |
| |
|
||||||||||| |||||||| || ||||| |||||||||||||| ||||||||||| |||||| |
|
|
| T |
34662044 |
atctaagaacttgtaaacttcgttacagctttggtaccctcagacacagcatgcttagccaat |
34662106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 607 - 669
Target Start/End: Complemental strand, 23869007 - 23868945
Alignment:
| Q |
607 |
atctaagaactagtaaacttagtgacagccttggtaccctcagaaacagcatgcttggccaat |
669 |
Q |
| |
|
|||||||||||||| |||||||| ||||| || || || |||||||||||||| ||||||||| |
|
|
| T |
23869007 |
atctaagaactagtgaacttagtcacagcttttgttccttcagaaacagcatgtttggccaat |
23868945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 50
Target Start/End: Complemental strand, 26434975 - 26434942
Alignment:
| Q |
17 |
acataaaggacatttttaaagatggtggaaggat |
50 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
26434975 |
acataaaggacatttttaaagatggtggaaggat |
26434942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 50
Target Start/End: Complemental strand, 26833686 - 26833653
Alignment:
| Q |
17 |
acataaaggacatttttaaagatggtggaaggat |
50 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
26833686 |
acataaaggacatttttaaagatggtggaaggat |
26833653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 603 - 669
Target Start/End: Complemental strand, 33216724 - 33216658
Alignment:
| Q |
603 |
tcaaatctaagaactagtaaacttagtgacagccttggtaccctcagaaacagcatgcttggccaat |
669 |
Q |
| |
|
|||||| ||||||| ||||||||| || ||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
33216724 |
tcaaatttaagaaccagtaaacttggtcacagccttggtaccctcagaaacagcatgtttggccaat |
33216658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 603 - 669
Target Start/End: Complemental strand, 45576482 - 45576416
Alignment:
| Q |
603 |
tcaaatctaagaactagtaaacttagtgacagccttggtaccctcagaaacagcatgcttggccaat |
669 |
Q |
| |
|
|||||||||||| || || || || || ||||| |||||||||||||||||| ||||||| |||||| |
|
|
| T |
45576482 |
tcaaatctaagagcttgtgaatttggtcacagctttggtaccctcagaaacaacatgcttagccaat |
45576416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 603 - 669
Target Start/End: Complemental strand, 47317561 - 47317495
Alignment:
| Q |
603 |
tcaaatctaagaactagtaaacttagtgacagccttggtaccctcagaaacagcatgcttggccaat |
669 |
Q |
| |
|
|||||| ||||||||||||||||| || ||||| |||||||||||||||||| |||| ||||||||| |
|
|
| T |
47317561 |
tcaaatttaagaactagtaaacttggtcacagctttggtaccctcagaaacaacatgtttggccaat |
47317495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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