View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21534_high_9 (Length: 260)
Name: NF21534_high_9
Description: NF21534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21534_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 43217830 - 43218081
Alignment:
| Q |
1 |
tctttgtagtgattccgatggtttctatgattctgttgctctccctacaacgctggaagatggtcctatcacaagtgttagctgggagccagatggacac |
100 |
Q |
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| T |
43217830 |
tctttgtagtgattccgatggtttctatgattctgttgctctccctacaacgctggaagatggtcctatcacaagtgttagctggcagccagatggacac |
43217929 |
T |
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| Q |
101 |
atttaagccattggtttcatgaattccattgtccagctctgggatacatctactatgacacgggtaaatgctgctcgtgttctttgtattgtttttaaac |
200 |
Q |
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| T |
43217930 |
attttagccattggtttgatgaattccattgtccagctctgggatacatctactatgacacgggtaaa--ctgcttgtgttctttgtattgtttttaaac |
43218027 |
T |
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| Q |
201 |
ttgaaattgttctctactctcatgtttgtgtggttttattttggtctctgctgc |
254 |
Q |
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| T |
43218028 |
ttgaaattgttctctattctcatgtttgtgtggttttattttggtcactgctgc |
43218081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 43170506 - 43170255
Alignment:
| Q |
1 |
tctttgtagtgattccgatggtttctatgattctgttgctctccctacaacgctggaagatggtcctatcacaagtgttagctgggagccagatggacac |
100 |
Q |
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| T |
43170506 |
tctttgtagtgattccgatggtttctatgattctgttgctctccctacaacgctggaagatggtcctatcacaagtgttagctggcagccagatggacac |
43170407 |
T |
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| Q |
101 |
atttaagccattggtttcatgaattccattgtccagctctgggatacatctactatgacacgggtaaatgctgctcgtgttctttgtattgtttttaaac |
200 |
Q |
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| T |
43170406 |
attttagccattggtttgatgaattccattgtccagctctgggatacatctactatgacacgggtaaa--ctgcttgtgttctttgtattgtttttaaac |
43170309 |
T |
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| Q |
201 |
ttgaaattgttctctactctcatgtttgtgtggttttattttggtctctgctgc |
254 |
Q |
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| T |
43170308 |
ttgaaatttttctctattctcatgtttgtgtggttttattttggtcactgctgc |
43170255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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