View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21534_low_2 (Length: 514)
Name: NF21534_low_2
Description: NF21534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21534_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 469; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 1 - 499
Target Start/End: Complemental strand, 28438950 - 28438452
Alignment:
| Q |
1 |
ttttgaagacaacacctgagccacttggttaatattctatttgggcgtgtaatacaatttaaactatttatcgggtttctctcaatatacgtataaacac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28438950 |
ttttgaagacaacacctgagccacttggttaatattctatttgggcgtgtaatacaatttaaactatttatcgggtttctctcaatatacgtataaacac |
28438851 |
T |
|
| Q |
101 |
taaaaattgttaattggtaaatattgctgtactcctccataaaaaattgaaaggctatctgaaatattgtcgggtttcactgcttttagataaccttcat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28438850 |
taaaaattgttaattggtaaatattgctgtactcctccataaaaaattgaaaggctatctgaaatattgtcgggtttcactgcttttagataaccttcat |
28438751 |
T |
|
| Q |
201 |
tcagtaggttgacacctttttagggaatccactcctttgcttggtaaacaagcaacaatatatatattgctttactcgcatggaatggagttggaaaata |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28438750 |
tcagtaggttgacacctttttagggaatccactcctttgcttggtaaacaagcaacaatatatatattgctttactcgcatggaatggagttggaaaata |
28438651 |
T |
|
| Q |
301 |
ataaataataacttgaattttagtagaagattaagcttgaaacctgtgaggatctcatnnnnnnnnnnccaagtttgcataaagccacacgttcttctac |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
28438650 |
ataaataataacttgaattttagtagaagattaagcttgaaacctgtgaggatctcataaaaaaaaaaccaagtttgcataaagccacacgttcttctac |
28438551 |
T |
|
| Q |
401 |
aatcaaggattcccattttcctgatcacattgacctcccacaagagggaagtggttctcaaggagtattggctgttaaggtttgtccatatacttactg |
499 |
Q |
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| T |
28438550 |
aatcaaggattcccattttcctgatcacattgacctcccacaagagggaagtggttctcaaggagtattggctgttaaggtttgtccatatacttactg |
28438452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 324 - 499
Target Start/End: Original strand, 35616367 - 35616540
Alignment:
| Q |
324 |
tagaagattaagcttgaaacctgtgaggatctcatnnnnnnnnnnccaagtttgcataaagccacacgttcttctacaatcaaggattcccattttcctg |
423 |
Q |
| |
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|||||||||||||||||| ||||||||||||||| |||||||||||||||||||| | ||||| || ||||||||||||||||| ||| |
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| T |
35616367 |
tagaagattaagcttgaagcctgtgaggatctca--gcaaaaaaaccaagtttgcataaagccacttgctcttccactatcaaggattcccatttcccta |
35616464 |
T |
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| Q |
424 |
atcacattgacctcccacaagagggaagtggttctcaaggagtattggctgttaaggtttgtccatatacttactg |
499 |
Q |
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|||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||| ||||| ||||||| |
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| T |
35616465 |
atcacattgacctccctcaagagggaagtagttctcaaggagtatcagctgttaaggtttgtacatatgcttactg |
35616540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 220 - 263
Target Start/End: Original strand, 696996 - 697039
Alignment:
| Q |
220 |
ttagggaatccactcctttgcttggtaaacaagcaacaatatat |
263 |
Q |
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| T |
696996 |
ttagggaatccactcatttgcttggtaaataagcaacaatatat |
697039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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